RNA id: TU332341


Basic Information

Item Value
RNA id TU332341
length 508
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G293043
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71170686 ~ 71174999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accaaatagagaggagaatgaggttgtGATACACCAAACAGAAAGGAGAATGTAGGTGTTGATATCCGAAACAGAGATGAGAatggggtggtgatataccaaaccgaaagaggagaatgaggtggtgatataccgAACAGAAGGATTAGAaggaggtggtgatataccaaatagagagaggagaatgaggtggtgacataccaaacagagagaggagaatgaggtgttaataaccaaacagagaagagaattatgtggtgatataccaaacagagagaggacaatgacgtggtgatataccaaacagagagaggagaatgaggtggtgatataccaaacagagagaggagaatgaggtggtgaaaTGTTAAATATAGAGGAGAAGggggtggtgatataccaaacagagaggagagtgaggtggtgatataccaaacagagaagagaatgaggtggtgatataccaaacagagagaggagaatgaggtggtgatataccaaacagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332212 lncRNA downstream 126805 71043640 ~ 71043881 (-) True G292931
TU332208 lncRNA downstream 128987 71041160 ~ 71041699 (-) True G292927
TU332146 lncRNA downstream 220898 70949397 ~ 70949788 (-) False G292869
TU332363 lncRNA upstream 14034 71189033 ~ 71189369 (-) True G293064
TU332428 lncRNA upstream 55137 71230136 ~ 71230661 (-) True G293127
TU332429 lncRNA upstream 55805 71230804 ~ 71231379 (-) True G293128
TU332823 lncRNA upstream 105584 71280583 ~ 71280916 (-) True G293486
TU332830 lncRNA upstream 125524 71300523 ~ 71301326 (-) True G293493
XM_036975071.1 mRNA downstream 160967 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 160983 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 220087 70945034 ~ 70950599 (-) True tmem30c
XR_005051368.1 mRNA downstream 263112 70896509 ~ 70907574 (-) True LOC118964322
XM_021597890.2 mRNA downstream 333195 70810604 ~ 70837491 (-) True LOC110520512
XR_005051369.1 mRNA upstream 497460 71672459 ~ 71676171 (-) True LOC118964323
XM_036975076.1 mRNA upstream 533483 71708482 ~ 71716359 (-) False LOC110520517
XM_036965166.1 mRNA upstream 579280 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 599031 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 599031 71774030 ~ 71785012 (-) False rnaseh2b
TU332200 other downstream 130534 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 450095 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1062736 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1174081 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1914142 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 728315 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 998050 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1396250 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1600408 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1701340 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile