RNA id: TU332363



Basic Information


Item Value
RNA id TU332363
length 337
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G293064
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71189033 ~ 71189369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacacaccgtcttgtataactaaccttgggGGACACACAAtccagtcccattcaaaatcctattttccctaaccctaacccaaaccttaccccaaaaacctaaccttaactcaaTCCCTAAACCTAGCActgaccctaaaactaaccctagctcctaaccctaaacctaatttgaaccctaacactaattctaaccttaaccctaaacccactAGAAATAGCAtctgaccttgtggggactaacaaaatctcaaattgtttgtttgtttactattgttgtgtggacttctggtccccacaagtatagttaaccACACGCGCATACACACCCGTGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU332341 lncRNA downstream 14034 71170686 ~ 71174999 (-) True G293043
TU332345 lncRNA downstream 16614 71168257 ~ 71172419 (-) True G293046
TU332339 lncRNA downstream 16917 71162738 ~ 71172116 (-) True G293042
TU332212 lncRNA downstream 145152 71043640 ~ 71043881 (-) True G292931
TU332208 lncRNA downstream 147334 71041160 ~ 71041699 (-) True G292927
TU332428 lncRNA upstream 40767 71230136 ~ 71230661 (-) True G293127
TU332429 lncRNA upstream 41435 71230804 ~ 71231379 (-) True G293128
TU332823 lncRNA upstream 91214 71280583 ~ 71280916 (-) True G293486
TU332830 lncRNA upstream 111154 71300523 ~ 71301326 (-) True G293493
TU332832 lncRNA upstream 113705 71303074 ~ 71303688 (-) True G293495
XM_036975071.1 mRNA downstream 179314 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 179330 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 238434 70945034 ~ 70950599 (-) True tmem30c
XR_005051368.1 mRNA downstream 281459 70896509 ~ 70907574 (-) True LOC118964322
XM_021597890.2 mRNA downstream 351542 70810604 ~ 70837491 (-) True LOC110520512
XR_005051369.1 mRNA upstream 483090 71672459 ~ 71676171 (-) True LOC118964323
XM_036975076.1 mRNA upstream 519113 71708482 ~ 71716359 (-) False LOC110520517
XM_036965166.1 mRNA upstream 564910 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 584661 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 584661 71774030 ~ 71785012 (-) False rnaseh2b
TU332200 other downstream 148881 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 468442 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1081083 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1192428 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1932489 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 713945 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 983680 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1381880 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1586038 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1686970 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile