RNA id: TU332849



Basic Information


Item Value
RNA id TU332849
length 462
lncRNA type intronic
GC content 0.44
exon number 2
gene id G293511
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71348833 ~ 71349318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caaacacaggtactctcaaacacacacacacacacaggtactctcaaacacacacacacacaggtactctcaaacacacacacacacacaggtactctcaaacacacacacacacactctcaaacacacacacagacactctcaaacacacacacagacactctcaaacacacacagacactctcaaacacacacagacactctcaaacacacacacacacagacactctcaaacacacaaacacagacattctcaaacacacacacacacaatgacactctcaaacacacacacacacacagacactctcaaacacacaaacacagacactctcaaacacacacacacagatactctcaaacacacacacagacactctcaaacacacaaacacagacactctcaaacacacacacacacagatactctcaaacacacacacagacactctcaaacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU332839 lncRNA downstream 28110 71320495 ~ 71320723 (-) True G293502
TU332832 lncRNA downstream 45145 71303074 ~ 71303688 (-) True G293495
TU332830 lncRNA downstream 47507 71300523 ~ 71301326 (-) True G293493
TU332823 lncRNA downstream 67917 71280583 ~ 71280916 (-) True G293486
TU332429 lncRNA downstream 117454 71230804 ~ 71231379 (-) True G293128
TU332852 lncRNA upstream 7006 71356324 ~ 71356834 (-) True G293514
TU332857 lncRNA upstream 11851 71361169 ~ 71361400 (-) True G293518
TU332867 lncRNA upstream 29904 71379222 ~ 71379854 (-) True G293528
TU332906 lncRNA upstream 98848 71448166 ~ 71449070 (-) False G293553
TU332907 lncRNA upstream 98848 71448166 ~ 71449070 (-) False G293553
XM_036975071.1 mRNA downstream 339114 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 339130 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 398234 70945034 ~ 70950599 (-) True tmem30c
XR_005051368.1 mRNA downstream 441259 70896509 ~ 70907574 (-) True LOC118964322
XM_021597890.2 mRNA downstream 511342 70810604 ~ 70837491 (-) True LOC110520512
XR_005051369.1 mRNA upstream 323141 71672459 ~ 71676171 (-) True LOC118964323
XM_036975076.1 mRNA upstream 359164 71708482 ~ 71716359 (-) False LOC110520517
XM_036965166.1 mRNA upstream 404961 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 424712 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 424712 71774030 ~ 71785012 (-) False rnaseh2b
TU332200 other downstream 308681 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 628242 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1240883 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1352228 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2092289 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 553996 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 823731 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1221931 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1426089 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1527021 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile