RNA id: TU332852


Basic Information

Item Value
RNA id TU332852
length 511
lncRNA type intronic
GC content 0.57
exon number 1
gene id G293514
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71356324 ~ 71356834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACCTAGGTCCTCCTCCTGTTGGTTATGCCATACCTAGGCCCTCCTCCTGTTGGCCACGCTATACCTAGGCCCTCCTCCTGTTGGCAATGCTATACCTAGGCCCTCCTCCTGTTGGTTATGCCATACCTAGGCCCTCCTCCTGTTGGCTATGCTATACCTAGGCCCTCCTCCTGTTGGCTATGCCATACCTAGGCCCTCCTCCTGTTGGCTATGCCATACCTAGACCCTCCTCCTGTTGGCTATGCCATACCTAGGCCCTCCTCCTGTTGGCTATGCCATACCTAGGCCCTCCTCCTGTTGGCTATGCCATACCTAGGCCGTCCTCCTGTTGGCTACGCTATACCTAGGCCCTCCTCCTGTTGGCTACGCTATACCTAGGCCCTCCTCCTGTTGGCTACGCTATACCTAGGCCCTCCTCCTGTTGGCTACGCTATACCTAGGCCCTCCTCCTGTTGGCTATGCCATACCTAGGCCCTCCTCCTACTGGCTATGCCATACCTAGGCCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332849 lncRNA downstream 7006 71348833 ~ 71349318 (-) True G293511
TU332839 lncRNA downstream 35601 71320495 ~ 71320723 (-) True G293502
TU332832 lncRNA downstream 52636 71303074 ~ 71303688 (-) True G293495
TU332830 lncRNA downstream 54998 71300523 ~ 71301326 (-) True G293493
TU332823 lncRNA downstream 75408 71280583 ~ 71280916 (-) True G293486
TU332857 lncRNA upstream 4335 71361169 ~ 71361400 (-) True G293518
TU332867 lncRNA upstream 22388 71379222 ~ 71379854 (-) True G293528
TU332906 lncRNA upstream 91332 71448166 ~ 71449070 (-) False G293553
TU332907 lncRNA upstream 91332 71448166 ~ 71449070 (-) False G293553
TU332909 lncRNA upstream 91332 71448166 ~ 71449070 (-) True G293553
XM_036975071.1 mRNA downstream 346605 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 346621 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 405725 70945034 ~ 70950599 (-) True tmem30c
XR_005051368.1 mRNA downstream 448750 70896509 ~ 70907574 (-) True LOC118964322
XM_021597890.2 mRNA downstream 518833 70810604 ~ 70837491 (-) True LOC110520512
XR_005051369.1 mRNA upstream 315625 71672459 ~ 71676171 (-) True LOC118964323
XM_036975076.1 mRNA upstream 351648 71708482 ~ 71716359 (-) False LOC110520517
XM_036965166.1 mRNA upstream 397445 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 417196 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 417196 71774030 ~ 71785012 (-) False rnaseh2b
TU332200 other downstream 316172 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 635733 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1248374 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1359719 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2099780 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 546480 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 816215 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1214415 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1418573 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1519505 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile