RNA id: TU333056



Basic Information


Item Value
RNA id TU333056
length 229
lncRNA type intronic
GC content 0.36
exon number 1
gene id G293691
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71669109 ~ 71669337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTGGGGGGGTGTGTCTcactcatggctacccatgtatttccatggaaatataacgtttatttggaaagtaatatacagttgaagtctgaggtttacatacaccttagccaaatacatttaaactcagtttttcacaatgcctgacatttaatccttgtagaaattccctgtctcaggtcagttaggatcatcactttattttagaaatgtgacatgtcagaataatag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU333050 lncRNA downstream 9476 71659345 ~ 71659633 (-) True G293685
TU333046 lncRNA downstream 12276 71656423 ~ 71656833 (-) True G293681
TU333045 lncRNA downstream 14127 71654700 ~ 71654982 (-) True G293680
TU333007 lncRNA downstream 63870 71604583 ~ 71605239 (-) True G293645
TU332966 lncRNA downstream 133454 71535454 ~ 71535655 (-) True G293606
TU333074 lncRNA upstream 39603 71708940 ~ 71715666 (-) False LOC110520517
TU333076 lncRNA upstream 39603 71708940 ~ 71715666 (-) True LOC110520517
TU333095 lncRNA upstream 62242 71731579 ~ 71731796 (-) True G293725
TU333104 lncRNA upstream 68942 71738279 ~ 71738586 (-) True G293729
TU333106 lncRNA upstream 70197 71739534 ~ 71740039 (-) True G293731
XM_036975071.1 mRNA downstream 659390 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 659406 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 718510 70945034 ~ 70950599 (-) True tmem30c
XR_005051368.1 mRNA downstream 761535 70896509 ~ 70907574 (-) True LOC118964322
XM_021597890.2 mRNA downstream 831618 70810604 ~ 70837491 (-) True LOC110520512
XR_005051369.1 mRNA upstream 3122 71672459 ~ 71676171 (-) True LOC118964323
XM_036975076.1 mRNA upstream 39145 71708482 ~ 71716359 (-) False LOC110520517
XM_036965166.1 mRNA upstream 84942 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 104693 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 104693 71774030 ~ 71785012 (-) False rnaseh2b
TU332200 other downstream 628957 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 948518 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1561159 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1672504 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2412565 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 233977 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 503712 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 901912 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1106070 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1207002 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile