RNA id: TU333104



Basic Information


Item Value
RNA id TU333104
length 308
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G293729
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71738279 ~ 71738586 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTAAGTCCATCCATTTACAAAGGTCAACCTCCACCTGTTGCAACAAACTGGCCAGATTGAGTTTATAGAGGTTGTTCAGATTACCATCCACCATTATGCCCAAATATGTGAAGCCCATAGGCAACCATCTAAAAGGAAACGTGTGCTTGATGGTATGATGGTCAAAGACAGACAACGGTAAGATTTCGCTTTTATCAAAATTGACCTTATATCCAGAGAAAGAACTATAACACTGTAGTAGGATCtgcaagtgagagagggagtgttctggGTTTGTTAGAAATAAGATAAGGTCGTCCGCAAAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU333095 lncRNA downstream 6483 71731579 ~ 71731796 (-) True G293725
TU333074 lncRNA downstream 22613 71708940 ~ 71715666 (-) False LOC110520517
TU333076 lncRNA downstream 22613 71708940 ~ 71715666 (-) True LOC110520517
TU333056 lncRNA downstream 68942 71669109 ~ 71669337 (-) True G293691
TU333050 lncRNA downstream 78646 71659345 ~ 71659633 (-) True G293685
TU333106 lncRNA upstream 948 71739534 ~ 71740039 (-) True G293731
TU333113 lncRNA upstream 12804 71751390 ~ 71751794 (-) True G293738
TU333114 lncRNA upstream 13326 71751912 ~ 71752323 (-) True G293739
TU333122 lncRNA upstream 46864 71785450 ~ 71785848 (-) True G293747
TU333130 lncRNA upstream 63383 71801969 ~ 71802295 (-) True G293755
XM_036975076.1 mRNA downstream 21920 71708482 ~ 71716359 (-) False LOC110520517
XR_005051369.1 mRNA downstream 62108 71672459 ~ 71676171 (-) True LOC118964323
XM_036975071.1 mRNA downstream 728560 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 728576 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 787680 70945034 ~ 70950599 (-) True tmem30c
XM_036965166.1 mRNA upstream 15693 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 35444 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 35444 71774030 ~ 71785012 (-) False rnaseh2b
XM_021597899.2 mRNA upstream 35444 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597901.2 mRNA upstream 193835 71932421 ~ 71935177 (-) False trim13
TU332200 other downstream 698127 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1017688 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1630329 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1741674 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2481735 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 164728 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 434463 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 832663 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1036821 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1137753 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile