RNA id: TCONS_00029795


Basic Information

Item Value
RNA id TCONS_00029795
length 973
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_014970
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 39754692 ~ 39758860 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtaaaaacaacacattctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtaagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatatggagacgctggaggctcgtataattaccaatagatgtcaacgcaatttttaaaacctgatttacgcctattatcgcagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaactgggtcgaaactactgtatgaataaacttcggtccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagtggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataagtatgttatcatttactttatatttaatgagtgaaaatataatcgtttgtccagtttagggtaactatgtctaataaaactttgattcattcatattatttattatttttttactttaaaaaatattacatttcaagtactaagtttagaaatgttttcggctgatctttttcattttaaattatttattgaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTTGATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTCTTGATGACAACTTGATGATCTGCAGGAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGCTCATAGGAACTCCAATCTTCCCAACTGTGAGAGGCCCTTGCTCCAGTGA

Function

GO:

id name namespace
GO:0000027 ribosomal large subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029792 lncRNA downstream 1092 39754692 ~ 39755650 (-) False XLOC_014970
TCONS_00030322 lncRNA downstream 154051 39595429 ~ 39602691 (-) True XLOC_014969
TCONS_00029509 lncRNA downstream 167587 39588596 ~ 39589155 (-) True XLOC_014968
TCONS_00029508 lncRNA downstream 177740 39560710 ~ 39579002 (-) True XLOC_014967
TCONS_00030321 lncRNA downstream 177839 39432317 ~ 39578903 (-) False XLOC_014967
TCONS_00030327 lncRNA upstream 565101 40323961 ~ 40328584 (-) True XLOC_014975
TCONS_00030328 lncRNA upstream 1150915 40909775 ~ 40985253 (-) False XLOC_014981
TCONS_00029796 lncRNA upstream 1162292 40921152 ~ 40922192 (-) True XLOC_014982
TCONS_00030329 lncRNA upstream 1182250 40941110 ~ 40970080 (-) False XLOC_014981
TCONS_00030330 lncRNA upstream 1182250 40941110 ~ 40970142 (-) False XLOC_014981
TCONS_00029502 mRNA downstream 884092 38766613 ~ 38872650 (-) False XLOC_014965
TCONS_00029504 mRNA downstream 926022 38793238 ~ 38830720 (-) True XLOC_014965
TCONS_00029503 mRNA downstream 926160 38783225 ~ 38830582 (-) False XLOC_014965
TCONS_00029499 mRNA downstream 1144928 38474567 ~ 38611814 (-) False XLOC_014963
TCONS_00029498 mRNA downstream 1217072 38473758 ~ 38539670 (-) False XLOC_014963
TCONS_00029510 mRNA upstream 408503 40167363 ~ 40175800 (-) True XLOC_014971
TCONS_00029511 mRNA upstream 423781 40182641 ~ 40186328 (-) False XLOC_014972
TCONS_00029513 mRNA upstream 427817 40186677 ~ 40192249 (-) False XLOC_014973
TCONS_00029514 mRNA upstream 428668 40187528 ~ 40191358 (-) True XLOC_014973
TCONS_00029515 mRNA upstream 437602 40196462 ~ 40199081 (-) False XLOC_014974
TCONS_00029505 other downstream 553007 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 1292329 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029496 other downstream 1292493 38464127 ~ 38464249 (-) True XLOC_014961
TCONS_00029494 other downstream 1694618 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029493 other downstream 1728124 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029512 other upstream 423874 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029518 other upstream 877712 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029522 other upstream 1022308 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029535 other upstream 1593962 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 2414254 42173114 ~ 42173228 (-) True XLOC_014994

Expression Profile

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