RNA id: TU333201


Basic Information

Item Value
RNA id TU333201
length 443
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G293822
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71861471 ~ 71865225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcagtagtctaaaggcctgcatctcagtagtctaaagggcagcatctcagtagtctaaagggctgcagctgagtagtctaaagggcagcatctcagtagtctaaagggcagcatctcagtagtctaaagggctgcatctcagtagtctaaagggctgcatctcagtagtctaaagggcagcatctcagtagtctaaagggctgcatctcagtagtctaaagggcatcatctcagtagtctaaagggctgcatctcagtagtctaaagggctgcagctcagtattctaaagggcagcatctcagtagtctaaagggctgcatctcagtagtctaaagggctgcagctgagtagtctaaagggcagcatctcagtagtctaaagggcagcatctcagttgtctaaagggctgcatctcagtagtctaaagggctgcagctcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333197 lncRNA downstream 4005 71857263 ~ 71857466 (-) True G293818
TU333130 lncRNA downstream 59176 71801969 ~ 71802295 (-) True G293755
TU333122 lncRNA downstream 75623 71785450 ~ 71785848 (-) True G293747
TU333114 lncRNA downstream 109148 71751912 ~ 71752323 (-) True G293739
TU333113 lncRNA downstream 109677 71751390 ~ 71751794 (-) True G293738
TU333208 lncRNA upstream 35191 71900416 ~ 71900646 (-) True G293828
TU333437 lncRNA upstream 40809 71906034 ~ 71906494 (-) True G294001
TU333438 lncRNA upstream 41816 71907041 ~ 71907424 (-) True G294002
TU333442 lncRNA upstream 45084 71910309 ~ 71910544 (-) True G294006
TU333444 lncRNA upstream 49708 71914933 ~ 71915167 (-) True G294008
XM_021597899.2 mRNA downstream 76458 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597898.2 mRNA downstream 76459 71774030 ~ 71785012 (-) False rnaseh2b
XM_036975077.1 mRNA downstream 76474 71774030 ~ 71784997 (-) False rnaseh2b
XM_036965166.1 mRNA downstream 96727 71754279 ~ 71764744 (-) True LOC110504652
XM_036975076.1 mRNA downstream 145112 71708482 ~ 71716359 (-) False LOC110520517
XM_021597901.2 mRNA upstream 67196 71932421 ~ 71935177 (-) False trim13
XM_021597900.2 mRNA upstream 67196 71932421 ~ 71935929 (-) False trim13
XM_021597903.2 mRNA upstream 67196 71932421 ~ 71937033 (-) True trim13
XM_036964604.1 mRNA upstream 112588 71977813 ~ 71979314 (-) True LOC110505427
XM_036975078.1 mRNA upstream 121095 71986320 ~ 71995551 (-) False LOC110520524
TU332200 other downstream 821319 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1140880 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1753521 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1864866 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2604927 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 38089 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 307824 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 706024 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 910182 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1011114 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile