RNA id: TU333405


Basic Information

Item Value
RNA id TU333405
length 595
RNA type TUCP
GC content 0.49
exon number 1
gene id G293984
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71903314 ~ 71903908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTGAAAGAGTATATGAATGGTTAATGACACTTACTATGCGCCTTGGAGACGAGTGTTCGAGTGGGGTCACACAGCGCAACTCGCTGGAAGATATACTTAATCATATCCTCTCGATATTTTCATCCACTTGACAGCAAGGATCCATGTTCAGAGTAAGTGCAGTTTCAGCAGGCTTCAAGGAAGTTGTTCTTTTGTTCCAGTATTTATAGGTTGCGTCAATGTTGCGAAAAGGGGGAGGCGGAGCGGTGGCacaagagagcgagcgagaagcAAAAAGAAACAGACTATGAGCGCAAAACATTCGAGTCTGGATCGCACGATGTAGTCACAAAAAACCTTATTCAAAATCCCAGACAAAATTGTCTGATCAGATCACATGCTCTCGGACGACCAGCATCCCTCCAAACTCCAACAGACACGAGTGAAAAGCCCCATCACCACCAACGGTATGGTCTACCGGGCGCTCGCCGTGCGCATCGGAGACTGTGGAGTCCTAGCTGGCCGGCAGTCAGATATAGGACCGGGAAATGCACAGAGACGCCACATGCAGACCAAATTCTTCCTACAGCATCGTGATGACTCACTGACCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333208 lncRNA downstream 2668 71900416 ~ 71900646 (-) True G293828
TU333201 lncRNA downstream 38089 71861471 ~ 71865225 (-) True G293822
TU333197 lncRNA downstream 45848 71857263 ~ 71857466 (-) True G293818
TU333130 lncRNA downstream 101019 71801969 ~ 71802295 (-) True G293755
TU333122 lncRNA downstream 117466 71785450 ~ 71785848 (-) True G293747
TU333437 lncRNA upstream 2126 71906034 ~ 71906494 (-) True G294001
TU333438 lncRNA upstream 3133 71907041 ~ 71907424 (-) True G294002
TU333442 lncRNA upstream 6401 71910309 ~ 71910544 (-) True G294006
TU333444 lncRNA upstream 11025 71914933 ~ 71915167 (-) True G294008
TU333447 lncRNA upstream 20156 71924064 ~ 71924299 (-) True G294011
XM_021597899.2 mRNA downstream 118301 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597898.2 mRNA downstream 118302 71774030 ~ 71785012 (-) False rnaseh2b
XM_036975077.1 mRNA downstream 118317 71774030 ~ 71784997 (-) False rnaseh2b
XM_036965166.1 mRNA downstream 138570 71754279 ~ 71764744 (-) True LOC110504652
XM_036975076.1 mRNA downstream 186955 71708482 ~ 71716359 (-) False LOC110520517
XM_021597901.2 mRNA upstream 28513 71932421 ~ 71935177 (-) False trim13
XM_021597900.2 mRNA upstream 28513 71932421 ~ 71935929 (-) False trim13
XM_021597903.2 mRNA upstream 28513 71932421 ~ 71937033 (-) True trim13
XM_036964604.1 mRNA upstream 73905 71977813 ~ 71979314 (-) True LOC110505427
XM_036975078.1 mRNA upstream 82412 71986320 ~ 71995551 (-) False LOC110520524
TU332200 other downstream 863162 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1182723 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1795364 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1906709 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2646770 69256005 ~ 69256544 (-) True G291138
TU333434 other upstream 269141 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 667341 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 871499 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 972431 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1668384 73572292 ~ 73572911 (-) True G296011

Expression Profile