RNA id: TU333447



Basic Information


Item Value
RNA id TU333447
length 236
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G294011
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71924064 ~ 71924299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCATTATCCAATATTGTTTGACTTTGCAAACTTTAATCACTTTTCAAAAAATATTATATAGGCCTATGTCAAAATACTCAATGTGGTCATGGTGAGTGTAGAATTTACTTATGAGTCGTGTCAAAGGATGAGGAGTTTGCATTAGTGGTTCATCTAACAGCTTTACCAGAGCAGCACGCATGTCATTAGTGGTTCATCTAACAGCTTTACCAGAGCAGCACGCATGTCATTAGTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU333444 lncRNA downstream 8897 71914933 ~ 71915167 (-) True G294008
TU333442 lncRNA downstream 13520 71910309 ~ 71910544 (-) True G294006
TU333438 lncRNA downstream 16640 71907041 ~ 71907424 (-) True G294002
TU333437 lncRNA downstream 17570 71906034 ~ 71906494 (-) True G294001
TU333208 lncRNA downstream 23418 71900416 ~ 71900646 (-) True G293828
TU333448 lncRNA upstream 778 71925077 ~ 71925290 (-) True G294012
TU333424 lncRNA upstream 1766 71926065 ~ 71944532 (-) True G293990
TU333451 lncRNA upstream 20891 71945190 ~ 71945443 (-) True G294015
TU333480 lncRNA upstream 55502 71979801 ~ 71980106 (-) True G294042
TU333483 lncRNA upstream 92776 72017075 ~ 72018622 (-) True G294045
XM_021597899.2 mRNA downstream 139051 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597898.2 mRNA downstream 139052 71774030 ~ 71785012 (-) False rnaseh2b
XM_036975077.1 mRNA downstream 139067 71774030 ~ 71784997 (-) False rnaseh2b
XM_036965166.1 mRNA downstream 159320 71754279 ~ 71764744 (-) True LOC110504652
XM_036975076.1 mRNA downstream 207705 71708482 ~ 71716359 (-) False LOC110520517
XM_021597901.2 mRNA upstream 8122 71932421 ~ 71935177 (-) False trim13
XM_021597900.2 mRNA upstream 8122 71932421 ~ 71935929 (-) False trim13
XM_021597903.2 mRNA upstream 8122 71932421 ~ 71937033 (-) True trim13
XM_036964604.1 mRNA upstream 53514 71977813 ~ 71979314 (-) True LOC110505427
XM_036975078.1 mRNA upstream 62021 71986320 ~ 71995551 (-) False LOC110520524
TU333405 other downstream 20156 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 883912 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1203473 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1816114 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1927459 69980346 ~ 69996605 (-) True G291901
TU333434 other upstream 248750 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 646950 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 851108 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 952040 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1647993 73572292 ~ 73572911 (-) True G296011

Expression Profile