RNA id: TU333424


Basic Information

Item Value
RNA id TU333424
length 1019
lncRNA type read_through
GC content 0.35
exon number 2
gene id G293990
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71926065 ~ 71944532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTAGAGACAAGTTTCTTTATTGTATTAGACAATAAGTATTCAGGTGTGGGTTAATATTCAACATACATCTCATTAGTGCAAACTAAAACAAGCATTTAACATTTGAGACAGTTTTCACACTTCAAAAGGAGATATGTGTTCATCTGACAGTTGAAATATAGTAGGGTAGGACAACGTCACATCCACAAATACAGCGTTGGGGAGTAACAGCAAAATTGTTATAAGATCACAGATAATTTAGAAAAACTagattacttcttggattactttcACATTTTCTAACACCTCTTAAAAGGAATGTAATCCAAAAGTAATCAGAATACGTTACGGAGTTTGGGCAATCCAAAAGTTGCGCCTCTGATTAGAAtttgacaggtaactagtaaaggattacattcagaaagtaacctacccaaccccaATCTGGAATAACCATCAGAGCCGTGACAAATTACTTTAAATGAGAGATCATGATCAAAATATGAAAAATCTAAATACGAATAACTAAATCAATGTCAATTATTAGGGAAACAAAACATCGAACATTAGTGTCAGCTATAAACAAATAcaatttgtatatatattttggggTGTGTATGCCCCCACATATCAATATGGCATTAAGAGTTCATTGAGATTCCATAATCAAACCATACATAGGTAGCAGTAAAGAACACTCAACATGGCTTCTGGTCCAGACCAATGGACATGTGTAGTGATTGCACAACAATACTGTCAGACTCAACACATAAACATTGTTTAAACTCTTTTCAGAAAGAAGCAGCAACCATAACAAATTGTTGCAATGCAGGATGATTACAACTGAAGCAAAGCAATATTGACTAACTTGACTGTCTTTCAGCTGCAaatgcgcacacacacacacacacaccatctctcccAATATTAATTTGGACAAGGTGGGCCAAGACATGCTAGAACACTAATGACTGATGGATTTCTGTTTGTTGTGACAAACTTTGTCATTTTTCAGAAGGGCGATACAGGTACAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333448 lncRNA downstream 775 71925077 ~ 71925290 (-) True G294012
TU333447 lncRNA downstream 1766 71924064 ~ 71924299 (-) True G294011
TU333444 lncRNA downstream 10898 71914933 ~ 71915167 (-) True G294008
TU333442 lncRNA downstream 15521 71910309 ~ 71910544 (-) True G294006
TU333438 lncRNA downstream 18641 71907041 ~ 71907424 (-) True G294002
TU333451 lncRNA upstream 658 71945190 ~ 71945443 (-) True G294015
TU333480 lncRNA upstream 35269 71979801 ~ 71980106 (-) True G294042
TU333483 lncRNA upstream 72543 72017075 ~ 72018622 (-) True G294045
TU333427 lncRNA upstream 170965 72115497 ~ 72118615 (-) True G293991
TU333535 lncRNA upstream 214443 72158975 ~ 72159261 (-) True G294093
XM_021597899.2 mRNA downstream 141052 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597898.2 mRNA downstream 141053 71774030 ~ 71785012 (-) False rnaseh2b
XM_036975077.1 mRNA downstream 141068 71774030 ~ 71784997 (-) False rnaseh2b
XM_036965166.1 mRNA downstream 161321 71754279 ~ 71764744 (-) True LOC110504652
XM_036975076.1 mRNA downstream 209706 71708482 ~ 71716359 (-) False LOC110520517
XM_036964604.1 mRNA upstream 33281 71977813 ~ 71979314 (-) True LOC110505427
XM_036975078.1 mRNA upstream 41788 71986320 ~ 71995551 (-) False LOC110520524
XM_021597908.2 mRNA upstream 41788 71986320 ~ 71996875 (-) False LOC110520524
XM_021597910.2 mRNA upstream 41788 71986320 ~ 71996879 (-) False LOC110520524
XM_021597911.2 mRNA upstream 41788 71986320 ~ 71996882 (-) False LOC110520524
TU333405 other downstream 22157 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 885913 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1205474 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1818115 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1929460 69980346 ~ 69996605 (-) True G291901
TU333434 other upstream 228517 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 626717 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 830875 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 931807 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1627760 73572292 ~ 73572911 (-) True G296011

Expression Profile