RNA id: TCONS_00029512


Basic Information

Item Value
RNA id TCONS_00029512
length 602
RNA type nonsense_mediated_decay
GC content 0.44
exon number 6
gene id XLOC_014972
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40182641 ~ 40186328 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGATGAACAGAAAATTAATTCAAAACCTCGCCGAGACTTTATGCAGACAAGTCAAACATTTTAATAAAACAGAGACGGAGTGTCTGATAAGGCTGTTCAACAGTCTGCTGGGAGAGCAGGCAGAGAGAAAGACGACTATTGGAGTGGACCGGGCCAAATTCAGAAATATACTGCACCACACTTTCGGGATGACCGACGACATGATGACGGACAGAGTTTGTCGTGTCATTGACAAGGACAACGATGGCTACTTAAGCGTTAAAGAGTGGGTTGAggctctgtctgtctttctaagAGGCACACTGGATGAAAAAATGAAATGTGTATGACCTGAACGGGGATGGATACATCTCACGTGAGGAGATGTTTCAGATGCTGAAAGACAGCCTCATCAGGCAGCCCACCGAAGAGGATCCTGATGAGGGGATTAAGGATATTGTGGAGATTGCCTTGAAAAAAATGGATTATGACCATGATGGAAGAGTTTCTTATGCTGATTTTGAGAAGACGGTCATGGATGAAAACCTTTTACTAGAAGCTTTTGGAAACTGCCTTCCTGATGCAAAGAGTGTACTAGCATTTGAGCAACAGGCATTCCAGAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040914-40 Predicted to enable calcium ion binding activity. Involved in cilium movement. Orthologous to human EFCAB1 (EF-hand calcium binding domain 1).

Ensembl:

ensembl_id ENSDART00000150972

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029793 lncRNA downstream 423874 39755827 ~ 39758860 (-) False XLOC_014970
TCONS_00029794 lncRNA downstream 423874 39755906 ~ 39758860 (-) False XLOC_014970
TCONS_00029795 lncRNA downstream 423874 39756742 ~ 39758860 (-) True XLOC_014970
TCONS_00030326 lncRNA downstream 423876 39754776 ~ 39758858 (-) False XLOC_014970
TCONS_00030325 lncRNA downstream 424556 39754776 ~ 39758178 (-) False XLOC_014970
TCONS_00030327 lncRNA upstream 137698 40323961 ~ 40328584 (-) True XLOC_014975
TCONS_00030328 lncRNA upstream 723512 40909775 ~ 40985253 (-) False XLOC_014981
TCONS_00029796 lncRNA upstream 734889 40921152 ~ 40922192 (-) True XLOC_014982
TCONS_00030329 lncRNA upstream 754847 40941110 ~ 40970080 (-) False XLOC_014981
TCONS_00030330 lncRNA upstream 754847 40941110 ~ 40970142 (-) False XLOC_014981
TCONS_00029510 mRNA downstream 6934 40167363 ~ 40175800 (-) True XLOC_014971
TCONS_00029502 mRNA downstream 1310084 38766613 ~ 38872650 (-) False XLOC_014965
TCONS_00029504 mRNA downstream 1352014 38793238 ~ 38830720 (-) True XLOC_014965
TCONS_00029503 mRNA downstream 1352152 38783225 ~ 38830582 (-) False XLOC_014965
TCONS_00029499 mRNA downstream 1570920 38474567 ~ 38611814 (-) False XLOC_014963
TCONS_00029513 mRNA upstream 414 40186677 ~ 40192249 (-) False XLOC_014973
TCONS_00029514 mRNA upstream 1265 40187528 ~ 40191358 (-) True XLOC_014973
TCONS_00029515 mRNA upstream 10199 40196462 ~ 40199081 (-) False XLOC_014974
TCONS_00029516 mRNA upstream 10199 40196462 ~ 40199098 (-) False XLOC_014974
TCONS_00029517 mRNA upstream 10322 40196585 ~ 40198478 (-) True XLOC_014974
TCONS_00029505 other downstream 978999 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 1718321 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029496 other downstream 1718485 38464127 ~ 38464249 (-) True XLOC_014961
TCONS_00029494 other downstream 2120610 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029493 other downstream 2154116 38028498 ~ 38028618 (-) True XLOC_014957
TCONS_00029518 other upstream 450309 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029522 other upstream 594905 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029535 other upstream 1166559 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 1986851 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 2409005 42595268 ~ 42595384 (-) True XLOC_015011

Expression Profile

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