RNA id: TU333539



Basic Information


Item Value
RNA id TU333539
length 332
lncRNA type intronic
GC content 0.44
exon number 1
gene id G294097
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72169702 ~ 72170033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCTGACACGATAGCTACCTGTATCATGAATATACTCACAGGTAAATGGTGTTGTTTTGCCTGACACGATAGCtacctgtatcatgaatacactcACAGGTAAATGGTGTTGTATTGCCCGACGCGATAGCtacctgtatcatgaatacactcACAGGTAAATGGTGTTGTTTTGCCCGACGCGATAGCtacctgtatcatgaatacactcACAGGTAAATGGTGTTGTATTGCCCGACGCGATAGCtacctgtatcatgaatacactcACAGGTAAATGGTGTTGTATTGCCCGACACGATAGCtacctgtatcatgaatacactcACAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU333538 lncRNA downstream 3365 72166106 ~ 72166337 (-) True G294096
TU333537 lncRNA downstream 4097 72164311 ~ 72165605 (-) True G294095
TU333535 lncRNA downstream 10441 72158975 ~ 72159261 (-) True G294093
TU333427 lncRNA downstream 51087 72115497 ~ 72118615 (-) True G293991
TU333483 lncRNA downstream 151080 72017075 ~ 72018622 (-) True G294045
TU333541 lncRNA upstream 2046 72172079 ~ 72172482 (-) True G294099
TU333571 lncRNA upstream 55024 72225057 ~ 72225299 (-) True G294126
TU333588 lncRNA upstream 68065 72238098 ~ 72243509 (-) True G294143
TU333672 lncRNA upstream 80780 72250813 ~ 72271706 (-) True G294198
TU333683 lncRNA upstream 113776 72283809 ~ 72284009 (-) True G294209
XM_036975080.1 mRNA downstream 55189 72010695 ~ 72114513 (-) False LOC110520523
XM_036975084.1 mRNA downstream 55189 72010695 ~ 72114513 (-) False LOC110520523
XM_036975085.1 mRNA downstream 55189 72010695 ~ 72114513 (-) True LOC110520523
XM_036975082.1 mRNA downstream 55190 72010695 ~ 72114512 (-) False LOC110520523
XM_036975090.1 mRNA upstream 94345 72264378 ~ 72266650 (-) True LOC110520529
XM_036975092.1 mRNA upstream 320815 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA upstream 323404 72493437 ~ 72537370 (-) False LOC110520531
LOC110504707 mRNA upstream 606683 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 621271 72791304 ~ 72825267 (-) False LOC110504714
TU333405 other downstream 265794 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1129550 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1449111 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2061752 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 2173097 69980346 ~ 69996605 (-) True G291901
TU333434 other upstream 3016 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 401216 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 605374 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 706306 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1402259 73572292 ~ 73572911 (-) True G296011

Expression Profile