RNA id: TU333571



Basic Information


Item Value
RNA id TU333571
length 243
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G294126
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72225057 ~ 72225299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaggtgtatttagagggcaggttggtcaggatgatatctatgagggtgcatgtgtttacggatttggggttgtacctggtaggttccatgataatttgaGTGAGaatgagggcatctagcttagattgtaggacgtgTTTTAAGGGTGTGTTAAGGgtgttacagtttttttcgattgctaaacgacagtgggcacaactggagtcacatgtgcaaaactctaactacagtctgcactaccaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU333541 lncRNA downstream 52575 72172079 ~ 72172482 (-) True G294099
TU333539 lncRNA downstream 55024 72169702 ~ 72170033 (-) True G294097
TU333538 lncRNA downstream 58720 72166106 ~ 72166337 (-) True G294096
TU333537 lncRNA downstream 59452 72164311 ~ 72165605 (-) True G294095
TU333535 lncRNA downstream 65796 72158975 ~ 72159261 (-) True G294093
TU333588 lncRNA upstream 12799 72238098 ~ 72243509 (-) True G294143
TU333672 lncRNA upstream 25514 72250813 ~ 72271706 (-) True G294198
TU333683 lncRNA upstream 58510 72283809 ~ 72284009 (-) True G294209
TU333691 lncRNA upstream 84802 72310101 ~ 72310991 (-) True G294217
TU333706 lncRNA upstream 118896 72344195 ~ 72344445 (-) True G294232
XM_036975087.1 mRNA downstream 18239 72121974 ~ 72206818 (-) False LOC110504660
XM_036975086.1 mRNA downstream 18239 72121975 ~ 72206818 (-) False LOC110504660
XM_036975088.1 mRNA downstream 18239 72121975 ~ 72206818 (-) False LOC110504660
XM_036975089.1 mRNA downstream 18239 72121975 ~ 72206818 (-) False LOC110504660
XM_036975080.1 mRNA downstream 110544 72010695 ~ 72114513 (-) False LOC110520523
XM_036975090.1 mRNA upstream 39079 72264378 ~ 72266650 (-) True LOC110520529
XM_036975092.1 mRNA upstream 265549 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA upstream 268138 72493437 ~ 72537370 (-) False LOC110520531
LOC110504707 mRNA upstream 551417 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 566005 72791304 ~ 72825267 (-) False LOC110504714
TU333434 other downstream 18259 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 321149 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1184905 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1504466 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2117107 70107540 ~ 70107950 (-) True G291977
TU333986 other upstream 345950 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 550108 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 651040 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1346993 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1406739 73632038 ~ 73633036 (-) False G296043

Expression Profile