RNA id: TU333672


Basic Information

Item Value
RNA id TU333672
length 1504
lncRNA type sense_over
GC content 0.49
exon number 3
gene id G294198
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72250813 ~ 72271706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGTTTAGGACGGCGTtaagaggagggggaaggaatCTTCTCATACTTCACTGGCTACGATATGAGGGACGACCAGGGAGACTTGCCTCAATTTGCATAACCTCGGCTGTTTTACACACAAGGAGggtgtccAGTATGAGGACTGTCATGAGGGACTGTCCATGAATCACCATGGAAACCTGTGATTGACAGACAGGCGCTAGCCCcatctggctggctggcaggccgTCATTACGATGAGCAGGAGATTTGCTGTACGGCGACAGGACCGTACGAAAAATGTCAACGATCGCCAGAGCCCCAGATTTCCTCCCATCCCCCAAGTAGCTAATGTTACCTAATGTTATCTCATGTTATCTAATGCCCATATTTATCATTCAAATAATCTAGACTGAAGTTAGCTGCAATACACCCCCACACCTCACTGACTCCCCTTATGTACCAACACCTCAACACACCTCACTGACTCCCCTTATGTACCAACACCTCAACACACCTCACTGACTCCCCTTATGTACCAACACCTCAACACACCTCACTGACTCCCCTTATGTACCAACACCTCAAACCACCTCACTGACTCCCCTTATGTACCAACACCTCAACACACCTCACTGACTCCCCTTATTTACCAACACCTCAACACACCTCACTGACTCCCCATATGTACCAACACCTCAACACACCTCACTCAAACCCCCTTACACTTTCCCCATGTACCTCATCCCAACCACTTTGGAACATACCCATCCTCCAACCTGTCTGTCACTAATCACTCCCTACACTCCTCACCCCAACCGTCCCTCACACCACCCACCCCCTCCTTACCCCCACACACCTTAGCCTGCCTCCTATGTAAATACCCTGTCTCCCTCTATTGGCCTATGTCTCAGCAGCGCTCTGCATGTTAACATTTCTAAACCCCCTCAAATTGTGACTAACAAACATTTTGTAGCCTTCAGTCTATTTGAACAGTCAGCCAGCCCTGCATGCCAAACAGCTAGCTAgaacagactgagacagactggaAGACTGGCACCCTGACCAGAGAGTAAGTGCTGTGTTTATCCTCTCATACATACACCACCAGCTTACTCCGGTTTGGCAGGGCAGTTACAAAGGACCAGCCAATGCCTGGCAAACTGACAGGCATCCGGGCTAGTTAGCACCTAGGAAGAGGTTCTATAAAGATAAAGGAGAAAAGACAAGCAATGTGtactcatccttctcctctccagtgaAGTCTTACcactcatccttctcctctccagtgaAGTCTTACCACTCATCCTTCACCTCTCCAGTGAAGTCTTACCACTCATCGTTCTCCACTCCAGTGAAGTCTTACcactcatccttctcctctccagtgaAGTCTTACcactcatccttctcctctccagtgaAGTCTTACcactcatccttctcctctccagtgaAGTCTTACCACTCATCATTCTCCTCTCCAGTGAAGTCTTACcactcatccttctcctctccagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333588 lncRNA downstream 7304 72238098 ~ 72243509 (-) True G294143
TU333571 lncRNA downstream 25514 72225057 ~ 72225299 (-) True G294126
TU333541 lncRNA downstream 78331 72172079 ~ 72172482 (-) True G294099
TU333539 lncRNA downstream 80780 72169702 ~ 72170033 (-) True G294097
TU333538 lncRNA downstream 84476 72166106 ~ 72166337 (-) True G294096
TU333683 lncRNA upstream 12103 72283809 ~ 72284009 (-) True G294209
TU333691 lncRNA upstream 38395 72310101 ~ 72310991 (-) True G294217
TU333706 lncRNA upstream 72489 72344195 ~ 72344445 (-) True G294232
TU333731 lncRNA upstream 116284 72387990 ~ 72388223 (-) True G294248
TU333739 lncRNA upstream 120800 72392506 ~ 72392841 (-) True G294256
XM_036975087.1 mRNA downstream 43995 72121974 ~ 72206818 (-) False LOC110504660
XM_036975086.1 mRNA downstream 43995 72121975 ~ 72206818 (-) False LOC110504660
XM_036975088.1 mRNA downstream 43995 72121975 ~ 72206818 (-) False LOC110504660
XM_036975089.1 mRNA downstream 43995 72121975 ~ 72206818 (-) False LOC110504660
XM_036975085.1 mRNA downstream 136300 72010695 ~ 72114513 (-) True LOC110520523
XM_036975092.1 mRNA upstream 219142 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA upstream 221731 72493437 ~ 72537370 (-) False LOC110520531
LOC110504707 mRNA upstream 505010 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 519598 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 519598 72791304 ~ 72826819 (-) False LOC110504714
TU333434 other downstream 44015 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 346905 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1210661 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1530222 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2142863 70107540 ~ 70107950 (-) True G291977
TU333986 other upstream 299543 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 503701 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 604633 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1300586 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1360332 73632038 ~ 73633036 (-) False G296043

Expression Profile