RNA id: TCONS_00029515


Basic Information

Item Value
RNA id TCONS_00029515
length 668
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_014974
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40196462 ~ 40199098 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCAGAAGCATCCCGAACAGAAGGAAAACCAGCCAGAAAGATGTTCCCAGTGTTGATGTTACTCATGGCGGCTCTGGTGGCTGCAGATGAGCCTCTGCTGGATCTGTCCATTCCGATGGAGACTGAAGACGTCTCTGCCTCTGTGATTCACTGCGATGCTCGAACTGTGTGTCCAGATAGAACAACATGCTGTCGGACTCCATATGGCAAATGGACATGTTGTCCATTCCCAATGGGTCAGTGTTGCAGGGATGGGATTCACTGCTGTCGACACGGTTATCGTTGCAATTTCGCCTCCACCCGATGCCTGCGAGGCTGGCTGTCACTGCCATCGTCCTTCCAGGAGGCCACCAGAACCTTCGAGAAAGATCAGACCCAGGCTGAGACTGTCCAATGTGAAGGAAATTTCTACTGCCCGGCTGAGAAGTTTTGCTGCAAGACTGGAACTGGCCAGTGGGGCTGCTGCAGCGAGTTGGAGTTGTAAGCAAACAACCACTGTTACACTGGTTCACCTCTTACTGAAGACTGTCAAAATGCAAGAGGCTCCAAACTTCATTCATGTTTCAGGCTATAGTTTACTCTTACTGAATtagtgtgaaataaaaactaaaagaatTACTGTCAAAATGCACCGTCATTTAATAAATCTTTGTGATTAGTGGGAAAA

Function

GO:

id name namespace
GO:0051960 regulation of nervous system development biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-264 Predicted to be active in extracellular region. Is expressed in brain; digestive system; gill; pharyngeal arch; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDART00000051970

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029793 lncRNA downstream 437602 39755827 ~ 39758860 (-) False XLOC_014970
TCONS_00029794 lncRNA downstream 437602 39755906 ~ 39758860 (-) False XLOC_014970
TCONS_00029795 lncRNA downstream 437602 39756742 ~ 39758860 (-) True XLOC_014970
TCONS_00030326 lncRNA downstream 437604 39754776 ~ 39758858 (-) False XLOC_014970
TCONS_00030325 lncRNA downstream 438284 39754776 ~ 39758178 (-) False XLOC_014970
TCONS_00030327 lncRNA upstream 124880 40323961 ~ 40328584 (-) True XLOC_014975
TCONS_00030328 lncRNA upstream 710694 40909775 ~ 40985253 (-) False XLOC_014981
TCONS_00029796 lncRNA upstream 722071 40921152 ~ 40922192 (-) True XLOC_014982
TCONS_00030329 lncRNA upstream 742029 40941110 ~ 40970080 (-) False XLOC_014981
TCONS_00030330 lncRNA upstream 742029 40941110 ~ 40970142 (-) False XLOC_014981
TCONS_00029513 mRNA downstream 4213 40186677 ~ 40192249 (-) False XLOC_014973
TCONS_00029514 mRNA downstream 5104 40187528 ~ 40191358 (-) True XLOC_014973
TCONS_00029511 mRNA downstream 10134 40182641 ~ 40186328 (-) False XLOC_014972
TCONS_00029510 mRNA downstream 20662 40167363 ~ 40175800 (-) True XLOC_014971
TCONS_00029502 mRNA downstream 1323812 38766613 ~ 38872650 (-) False XLOC_014965
TCONS_00029519 mRNA upstream 517894 40716975 ~ 40826024 (-) False XLOC_014977
TCONS_00029520 mRNA upstream 518523 40717604 ~ 40776267 (-) False XLOC_014977
TCONS_00029521 mRNA upstream 518523 40717604 ~ 40776608 (-) True XLOC_014977
TCONS_00029523 mRNA upstream 649028 40848109 ~ 40855106 (-) True XLOC_014979
TCONS_00029524 mRNA upstream 700829 40899910 ~ 40906161 (-) True XLOC_014980
TCONS_00029512 other downstream 10199 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029505 other downstream 992727 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 1732049 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029496 other downstream 1732213 38464127 ~ 38464249 (-) True XLOC_014961
TCONS_00029494 other downstream 2134338 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029518 other upstream 437491 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029522 other upstream 582087 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029535 other upstream 1153741 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 1974033 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 2396187 42595268 ~ 42595384 (-) True XLOC_015011

Expression Profile

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