RNA id: TU333742



Basic Information


Item Value
RNA id TU333742
length 349
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G294259
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72395288 ~ 72395636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtgtggctgtagaagtggctgtagaactgtctgtgtgttatgctgtagaactgtctgtgtgtggctgtagaAGTTGCTGTAGAAGTGGCTGTagaactgtctgtgtgtggctgtagaagtggctgtagaactgtctgtgtgtggctATAGAACTGTCTGTagaactgtctgtgtgtggctgtagaactggctgtagaactgtctgtgtgttatgctgtagaactgtctgtgtgtggctgtagaAGTGGCTGTAGAAGTGGCTGTagaactgtctgtgtgtggctgtagaagtggctgtagaactgtctgtgtgtggctATAGAACTGTCTGTagaactgtctgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU333739 lncRNA downstream 2447 72392506 ~ 72392841 (-) True G294256
TU333731 lncRNA downstream 7065 72387990 ~ 72388223 (-) True G294248
TU333706 lncRNA downstream 50843 72344195 ~ 72344445 (-) True G294232
TU333691 lncRNA downstream 84297 72310101 ~ 72310991 (-) True G294217
TU333683 lncRNA downstream 111279 72283809 ~ 72284009 (-) True G294209
TU333750 lncRNA upstream 7173 72402809 ~ 72403136 (-) True G294267
TU333751 lncRNA upstream 9031 72404667 ~ 72404949 (-) True G294268
TU333754 lncRNA upstream 12685 72408321 ~ 72408777 (-) True G294271
TU333755 lncRNA upstream 14297 72409933 ~ 72410137 (-) True G294272
TU333775 lncRNA upstream 46122 72441758 ~ 72442130 (-) True G294292
XM_036975090.1 mRNA downstream 128638 72264378 ~ 72266650 (-) True LOC110520529
XM_036975087.1 mRNA downstream 188470 72121974 ~ 72206818 (-) False LOC110504660
XM_036975092.1 mRNA upstream 95212 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA upstream 97801 72493437 ~ 72537370 (-) False LOC110520531
LOC110504707 mRNA upstream 381080 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 395668 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 395668 72791304 ~ 72826819 (-) False LOC110504714
TU333434 other downstream 188490 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 491380 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1355136 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1674697 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2287338 70107540 ~ 70107950 (-) True G291977
TU333986 other upstream 175613 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 379771 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 480703 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1176656 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1236402 73632038 ~ 73633036 (-) False G296043

Expression Profile