RNA id: TU333790



Basic Information


Item Value
RNA id TU333790
length 285
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G294307
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72454934 ~ 72455218 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATAACAGACCCTGCAATTTGCGTTGCCATTTGAATGATCCAGTTAGGCTGTGCTTGTCAGGGCTGTTTGTACACTGAATGTAGTAAATATGTGTCAAGAGTGGCTGGAGAGGCAGTGGGTGAGGATCTCCACTAGTCACATCTATTACCATGGAATGGACTAGCATTGTTACGTACACACTGGTTAAAAGAGTCATGGTATTGTTGTTTACTACAAATGTcttcacagtacacacacacacccctacacacactaatATTTGGGTAGCATTGCTCGGGTATTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU333787 lncRNA downstream 1745 72452926 ~ 72453189 (-) True G294304
TU333784 lncRNA downstream 2943 72451419 ~ 72451991 (-) True G294301
TU333775 lncRNA downstream 12804 72441758 ~ 72442130 (-) True G294292
TU333755 lncRNA downstream 44797 72409933 ~ 72410137 (-) True G294272
TU333754 lncRNA downstream 46157 72408321 ~ 72408777 (-) True G294271
TU333794 lncRNA upstream 1489 72456707 ~ 72456935 (-) True G294310
TU333795 lncRNA upstream 2157 72457375 ~ 72457582 (-) True G294311
TU333796 lncRNA upstream 2461 72457679 ~ 72457889 (-) True G294312
TU333803 lncRNA upstream 5590 72460808 ~ 72461106 (-) True G294319
TU333804 lncRNA upstream 5991 72461209 ~ 72461488 (-) True G294320
XM_036975090.1 mRNA downstream 188284 72264378 ~ 72266650 (-) True LOC110520529
XM_036975087.1 mRNA downstream 248116 72121974 ~ 72206818 (-) False LOC110504660
XM_036975092.1 mRNA upstream 35630 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA upstream 38219 72493437 ~ 72537370 (-) False LOC110520531
LOC110504707 mRNA upstream 321498 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 336086 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 336086 72791304 ~ 72826819 (-) False LOC110504714
TU333434 other downstream 248136 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 551026 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1414782 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1734343 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2346984 70107540 ~ 70107950 (-) True G291977
TU333986 other upstream 116031 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 320189 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 421121 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1117074 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1176820 73632038 ~ 73633036 (-) False G296043

Expression Profile


TU333790 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
End of interactive chart.

TU333790 Expression in each Bioproject

Bar chart with 9 bars.
TU333790 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.