RNA id: TU333867



Basic Information


Item Value
RNA id TU333867
length 302
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G294366
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72485488 ~ 72485789 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaaacctgaaaatagctctttAGCGAcagtccccatccaacctgacagggcttgagaggatctgcagagaagaatgggagaaactccccaaatacaggtgtgccaaccttgtagcgtcatacccaagaagagtgaaatcgctgccaaaggtgcttcaacaaagtactgagtgaagggtctgaagactcatgtaaatgtgatattttaagattctaaaaatgtgtttttgcttagtcattatggggcattgtgtgtagattgaagtggggaaaaaactatttaatcaattctataataaggct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU333865 lncRNA downstream 545 72484016 ~ 72484943 (-) True G294365
TU333863 lncRNA downstream 4083 72480846 ~ 72481405 (-) True G294363
TU333851 lncRNA downstream 7521 72461845 ~ 72477967 (-) True G294353
TU333804 lncRNA downstream 24000 72461209 ~ 72461488 (-) True G294320
TU333803 lncRNA downstream 24382 72460808 ~ 72461106 (-) True G294319
TU333868 lncRNA upstream 373 72486162 ~ 72486670 (-) True G294367
TU333860 lncRNA upstream 2891 72488680 ~ 72490684 (-) True G294361
TU333862 lncRNA upstream 5083 72490872 ~ 72500690 (-) True LOC110520531
TU333875 lncRNA upstream 40206 72525995 ~ 72526300 (-) True G294374
TU333878 lncRNA upstream 45214 72531003 ~ 72531258 (-) True G294377
XM_036975090.1 mRNA downstream 218838 72264378 ~ 72266650 (-) True LOC110520529
XM_036975087.1 mRNA downstream 278670 72121974 ~ 72206818 (-) False LOC110504660
XM_036975092.1 mRNA upstream 5059 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA upstream 7648 72493437 ~ 72537370 (-) False LOC110520531
LOC110504707 mRNA upstream 290927 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 305515 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 305515 72791304 ~ 72826819 (-) False LOC110504714
TU333434 other downstream 278690 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 581580 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1445336 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1764897 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2377538 70107540 ~ 70107950 (-) True G291977
TU333986 other upstream 85460 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 289618 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 390550 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1086503 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1146249 73632038 ~ 73633036 (-) False G296043

Expression Profile