RNA id: TCONS_00030327


Basic Information

Item Value
RNA id TCONS_00030327
length 4529
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_014975
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40323961 ~ 40328584 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atatatatatatatatatatatatatatatatatttactcaaCTTTCATCCCACATACTGCACTTGACTCGAATCAAGTTGAATCAActaaaaaagctctgcagcaagttgccttacgattttaagttgagtcaacatttgtttttgtttttttacagtgtggttatgaaaaaataacgaagagaccacttgaaaatgaTCCGTTTGTCTTGAATTATTAACTAAGGGTTTGAGATGCTATTATTTGTTTGATTCTATAATAGTGTGAACATATTTCTTCTAAATTTCATATTGTCATGCAaggttttttttcagaaaataaaaggtcagaataaatattttcatttattgtaattgaaaaaaatgttgttattccATCAGATATTGAAGGTAAAACACTGATATTGTGTGGTCTAAAAAGAAATGAACATTTCATGtctttatgcaaaaaataaataaaagttctaAGTgacattttgaattttaatttgggaaatatttaatcagtagtctacagcagtgtttctcaaccacgttcctaaaggaccaccaacactgcatgtttccgatgtctcctttgtctgtcacacccattacatgtctttcagtctctgctccAAGCTGATGATctgtgtttggttaagaagacatgaaaaatgtgcaaagctggtggtcctccaggagtgtggttgagaaacactggtccaCAGAATAAAAAAGTAGCCAAACAGATAACTATCTGGACTGGACATTTTCAACTGGTCTCCTCATATTTTTACATAGCAGCGTTTTGGCTTCCATTATAAAGGTTTTTGTAAAGTCATTTTGGGTGAATTGTGCCTTTGACTGTGTGAATGTGTTGTAGAACTACAGTGGCTGTCTaaaacgtctcatccaaaaacTTCTATCTGGTTTCACCAGGTTCATTTCTGAAGCagcttccttccttccctccacTTTTTCACCATTTGCTAAACACAAAAGGCACTTAATGGTCTACAGAGACCCATTTAGCAGATAATACAGTTTGATACACATATTGTGTTGATCTGTGCAGACAATTAAGAGATAGTTTCACCCCCCAAAATTAACAATTGCTTTAAATTTATTTACCTTCAGGTCACCCAAGATCAGTGGTGGAGGCAAGGGGGTAGttgaagacaaaaaataaataaataaatacattttaaaaagggggTGGGGTGTGGGGGGTTGTGAatcagacgaaagtgaagaagtGAAGAGGAGGTGGCAGTGTAGTAGTAGAAAAAAGTAGGGGGGGGGTGGTAGTTGCAGACGAAACTGAAAagcagaggtgtagttgcaaacaAAAGTGAAGGGGGGGTACTTGCAGACAAAAAAAGCGGAAGGTAGTTGCAGACAAAAGTGAGGGGGGATGGCAGTGTAATAGTGGACAAAAGTAAAGAGGGGGTGTAGTTTCAGATGAAAATTAAAAGTAGAGGGTAGTTGCAGACAAAAGTAAAGGGGGTGGCAGTGTAGTAGTGGACAAAAGTAAACAGAGGGGGTAGTTGCAGACAAAACTGAAAAGTGGAAGGGTAGTCACAGACAAAAGTAAAGGGGGCGTACTTGCAGACAAAAAAATGGAGGGTAGTTGCAGACAAAAGAGGGGGGGGCAGTGTAGTAGTGGACAAAAGTAAAGAGGGGTGGGGGTAgtttaagatgaaaaaaaaacgcAGAGGGTAGTCACAGACAAAAGTAAAGGGGGTGGCAGTGTAGTAGTGGACGAAATTGAAGAGAGGGATAGATGCTGATGAAACTAAAAAGTGAAAGGGTAGTCGCAGACAAAAGTGAAGGGGGGGTGGTTGTGTAGTAGTGAACAAAATTGAAGAGAGGTGGGGTAGTTGCAGACAAAACTGAAAAAAGGAGGTAGTCGCAGACAATAGTCAAGGAGGGTAGCAGTAGAGTCGCTGATGAAAGTGATGAGGGGGGTGGTGGTGGAGTCGCagacaaaaataaacaagggtGGTGATGGCCCTGGAGTCCCGGACAAAGTGAAGAGCGAAGGGGGGTTGGGGGAGTCAGACGAAAATGATAGAGGGGACAGGTGACGGTGTAGATGTGGACAAAAGTGAATGATGAGTGGGGGTGGGTTTAGTAGACAGGAATGAAATAATAAGCGGAAGGGGGCAAAGGGAGAGGGTTGGGATTTGTTGCGGATGAAAGTGATGAGTGGGGGGTGGGGTTAGAAGTTGGGAATGAAAGAAAAGAGTGGGAAGGGGGAGGAGGTTGCGGTTGGTCGCAGACGAAAGTGATGAGTGGGAATAGGGTTAGTAGTTGGGGATGAAAGTAAAGAGTGTTGGGAGGGAGGGGGTTGGGGTtagtcgcggacgaaagtgatgAGTGGGGATGGGGTTAGTAGTTGGGGATAAAAGTAAAGAGTGTTGGGAGGGAGGGGGTTGGGGTtagtcgcggacgaaagtgatgAGTGGGGATGGGGTTAGTAGTTGGGGATGAAAGTAAAGAGTGTTGGGAGGGAGGGGGTTGGGGTtagtcgcggacgaaagtgatgAGTGGGGATGGGGTTAGTAGTTGGGGATGAAAGTAAAGAGTGTTGGGAGGGAGGGGGTTGGGGTtagtcgcggacgaaagtgatgAGTGGGGATGGGGTTAGTAGTTGGGGATAAAAGTAAAGAGTGTTGGGAGGGAGGGGGTTGGGGTTAGTCACGGACGAAAGTGATGAGTGGGGATGGGGTTAGAGGTTGGGGCTGATGTTTggcaaaaaagaagatatttgaaaggttgtaaacttgtaaccattgacttcaatggtATTTATTTCCACCTACCACAGAAGTCCATAATTACACGTTTTGagcttacttcaaaatatctgctttactACTTTAGTAGAAAGAGTGGTTCCATTTAGAACCATTTGATGGCGAGTAAATAGTaagcaaataataatttttgggtgaactgtccctttaaaagtgAAATGGAAGGATGTAGCATAGTGTGTTTATACAATAAAGGACCTGGAATTACAGGATAACACATTACTCTCCGAGCCTCGAACGAATCTCACAACCTGACCTCCAAACCTAACACTCTCCAACTCTATACAGCTACTTTTACTAGACTTTCAGCTACTCTCTCATACACAGATTTCTATAACCAATCTTATTTCTGCTCTAAAGCAAACCCTAAAGTCAACATGCGACCATCCTTTCAACTACGTCTCGGCACTAAATCCCTGAAGGCAGGGTGCAGACTGTTTGGTTTACATCGACAATGTTTTCTACAACAACCTACACCTTCAAGTTCACTAAAATTAAgggtaacattttaaaatgagggTCTATTAGTTAAGATCAATGTATTAACAAACATAAACATGAACAATAATCACAGCATTTAataagttcaacatttactaatgcatccaAAGTCATAAGCACAAGAACTATTTTCAGTAAATAGCAttagcaaagatgaataaatactgcaatacacttattgttcaatgtttgtttaggttagtaaatacattataaCTAATAAACCACTATTTTAAAGTGTCACCAAATTAAGacaaaagccaacaaataaaaatgtcaacaatcaACACTGACATTTCAAAATAAGTGAACAGGATGTGGAACTCATAGTAATGATACAAAAACAATTACACTATAACATTGTTGCTAAATAGTGCTTCAGAACATTAAATAAAGCACTATAACTCTGCGTGTTCATAGTTATGCAGTCTTCAACCCCCCCCAAAACCCCCCTAAAATGCGTATCAAACTGCAGTAATCCTCATGAATCCGTCCTGATCGGCGAAAGTGTGAATTGAAAGCGATTACATATTAAGAGGTTCCGTTCAACGGGCCTGAACTTGCAGTAGTCGCTGTTCTGCTTGTAATTCCTCAATCCTGTTTGGGTCCAATGTTAAATCCATCTTCATGGCAGTGATGTGCTGCTAAAACTTAGTACATGTAGACTTGCGTTCATGAGAACAGATGATCTCTGGCAGTGTGGTGAACTGAACAAAGCCCAGACGAGCAGCTTCTGATCCTGTGCGGATGATTAGTAGGCAGCATCTGGTTGGGTGGCAGTAGTGAGGGCGAAAGGAAAACCTGACGGACCGATATTTTTGCGACGGTGATTTGTTAAAAGCAGCATGTGACGGCGTTTTGCTGTGGAAGACGAGTTTGTTTGTGTGGCGGCAGGTGTTTTAGGCGGCTCTCTCCTCCAGGGAGGGCTTTTTGCTGGGGAAGGGCTGAGCGTACAGGCTCTTGCTGGTGCTGTCCAGACTCTGGAAGTACAGGTGAGACAGTGCATCGTAAGCTGATATCCTTCTGGAGGGGTTGAAGGACAGGAAACGCTGTGTGTTGAGAGAGATGAGAAGAATAAATGACTATTGCATGGGATATTTGTCATATTATTGATATTGATATTATTGTAGTTGTTGGTTTAATAGTGTTGTCTTGTGTGAGATAACAGTATTAAGTAttataagaagcattttctagacaagtaataCATCTTTTATATTTATTCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029793 lncRNA downstream 565101 39755827 ~ 39758860 (-) False XLOC_014970
TCONS_00029794 lncRNA downstream 565101 39755906 ~ 39758860 (-) False XLOC_014970
TCONS_00029795 lncRNA downstream 565101 39756742 ~ 39758860 (-) True XLOC_014970
TCONS_00030326 lncRNA downstream 565103 39754776 ~ 39758858 (-) False XLOC_014970
TCONS_00030325 lncRNA downstream 565783 39754776 ~ 39758178 (-) False XLOC_014970
TCONS_00030328 lncRNA upstream 581191 40909775 ~ 40985253 (-) False XLOC_014981
TCONS_00029796 lncRNA upstream 592568 40921152 ~ 40922192 (-) True XLOC_014982
TCONS_00030329 lncRNA upstream 612526 40941110 ~ 40970080 (-) False XLOC_014981
TCONS_00030330 lncRNA upstream 612526 40941110 ~ 40970142 (-) False XLOC_014981
TCONS_00030331 lncRNA upstream 615320 40943904 ~ 40985308 (-) True XLOC_014981
TCONS_00029516 mRNA downstream 124863 40196462 ~ 40199098 (-) False XLOC_014974
TCONS_00029515 mRNA downstream 124880 40196462 ~ 40199081 (-) False XLOC_014974
TCONS_00029517 mRNA downstream 125483 40196585 ~ 40198478 (-) True XLOC_014974
TCONS_00029513 mRNA downstream 131712 40186677 ~ 40192249 (-) False XLOC_014973
TCONS_00029514 mRNA downstream 132603 40187528 ~ 40191358 (-) True XLOC_014973
TCONS_00029519 mRNA upstream 388391 40716975 ~ 40826024 (-) False XLOC_014977
TCONS_00029520 mRNA upstream 389020 40717604 ~ 40776267 (-) False XLOC_014977
TCONS_00029521 mRNA upstream 389020 40717604 ~ 40776608 (-) True XLOC_014977
TCONS_00029523 mRNA upstream 519525 40848109 ~ 40855106 (-) True XLOC_014979
TCONS_00029524 mRNA upstream 571326 40899910 ~ 40906161 (-) True XLOC_014980
TCONS_00029512 other downstream 137698 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029505 other downstream 1120226 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 1859548 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029496 other downstream 1859712 38464127 ~ 38464249 (-) True XLOC_014961
TCONS_00029494 other downstream 2261837 38062000 ~ 38062124 (-) True XLOC_014958
TCONS_00029518 other upstream 307988 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029522 other upstream 452584 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029535 other upstream 1024238 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 1844530 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 2266684 42595268 ~ 42595384 (-) True XLOC_015011

Expression Profile

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