RNA id: TU333860


Basic Information

Item Value
RNA id TU333860
length 1983
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G294361
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72488680 ~ 72490684 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccttttgccttgatgacagctttgcacactcttggcattttctcaaccagcttcacaaggtagtcacctggaatgcatttcaattaacagttgtgccctgttaaaagttaatatgtggaatatattaatattaatttgtggaacttattttcttcttaatgcgtttgagccagttgtttgtgttctgacaaggtaggggtggtatacagaaagaCATATTTGGTTaacgaccaagtccatattaaggcaagaacagctcaaataggcaaagagaaatgacagtccatcattactttaagacatgaaggtcagtcaatctggaatatTGATAGAACATTTTcgtcaagtgcagtcacaaaaaccatcaagtgctatgatgaaactggctctcatgaggaccgccacaggaatggaagacccagttgtctctgctgcagaggataagttcattagagttaccagcctcagaaattgcagcccaaataaatgcttcagagttcaagtaacagacacatctcaacatcaactgttcacatGAGAAGGCGTGAATCAGGccgtcatggtcgaattgctgcaaagaaaccactactaaataaGAAGatgagacttgtttgggccaagaaagacAAGCAATGGAAagtagaccggtggaaatctgtccttttggactgatgagtccaaatttgacatttttcatTTCCAACcagtgtgtctttgtgagatgccgAGTAGGTGAAAGGAGGATCTccacgtgtgtggttcccactgtgttgtgtggggctGCTTTTTGGTGAcactggtgatttatttagaattaaaggcacacttcaccagcatcccatctggtttgcacttagtcccactatcatttgtttttcaacaagacaataacccaaaacacagctccaggctgtgtaagggctatttgaccaagaaggaaagtgatagagtgctgcatcagatgacctggcctccacaatcaaccgaccTTAATCaaatttagatggtttgggatgatttggactgcagagggaaggaaaagcagccaacaaatgctcagcatatgtgggaactccttcaagcctgttggaaaagcattccagattaagctggttgagagaatgccaagtgtgtgcaaagctgtaatcaaggcaaaaggtggctaccttgaagaatctaaaatatattttgattcatttaaaacttttttagttactacatcaaatcaaatcaaatgtatttaaatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccgaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgttccgggtggagattataacagaacatggccaagatcttcaaatgttcataaatgaccagcatggtccaataataataaggcagaacagttgaaactggagcagcagcacggccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctgaggcatggtcctagggctcaggtcctccgacagagagaaagaaagagagaaagagagaattaaagagagcacacttaaattcacacaggacaccgaataggacaggagaagtactccagatataacaaactgaccctagccccccgacacataaactactgcagcataaatactggaggctgagacaggaggcgtcaggagacactgtggccccatccgaggacacccccggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatgttcaaccaccaatttaccatcctgagacaaggccgagtatagcccacgaagatctccgccacgggACAACCCTACATTATTccatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333868 lncRNA downstream 2010 72486162 ~ 72486670 (-) True G294367
TU333867 lncRNA downstream 2891 72485488 ~ 72485789 (-) True G294366
TU333865 lncRNA downstream 3737 72484016 ~ 72484943 (-) True G294365
TU333863 lncRNA downstream 7275 72480846 ~ 72481405 (-) True G294363
TU333851 lncRNA downstream 10713 72461845 ~ 72477967 (-) True G294353
TU333862 lncRNA upstream 188 72490872 ~ 72500690 (-) True LOC110520531
TU333875 lncRNA upstream 35311 72525995 ~ 72526300 (-) True G294374
TU333878 lncRNA upstream 40319 72531003 ~ 72531258 (-) True G294377
TU333881 lncRNA upstream 45363 72536047 ~ 72536250 (-) True G294380
TU333886 lncRNA upstream 49884 72540568 ~ 72540801 (-) True G294385
XM_036975090.1 mRNA downstream 222030 72264378 ~ 72266650 (-) True LOC110520529
XM_036975087.1 mRNA downstream 281862 72121974 ~ 72206818 (-) False LOC110504660
XM_036975092.1 mRNA upstream 164 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA upstream 2753 72493437 ~ 72537370 (-) False LOC110520531
LOC110504707 mRNA upstream 286032 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 300620 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 300620 72791304 ~ 72826819 (-) False LOC110504714
TU333434 other downstream 281882 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 584772 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1448528 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1768089 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2380730 70107540 ~ 70107950 (-) True G291977
TU333986 other upstream 80565 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 284723 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 385655 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1081608 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1141354 73632038 ~ 73633036 (-) False G296043

Expression Profile