RNA id: TU333986


Basic Information

Item Value
RNA id TU333986
length 1171
RNA type TUCP
GC content 0.40
exon number 4
gene id G294451
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72571249 ~ 72575432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCATGCATACCGGGATCTTAAACAGGCTTAGatactttttaaatgtaatttgattggtggattcaaataaagagagagagagagagagagatggacattTAGATAGAGAtgtcagaacagcagagagatggacatgtagatatagatgtgtcagaacagcagagagatggGCATGTAGATAGAGAtgtcagaacagcagagagatgAACATGTAGATAtagatgtgtcagaacagcagagagatgaacatgtagatagagatgtgtcagaacagcagagagatgaTCATTTAGATAgagatgtgtcagaacagcagagagatggacatgtagatatagatgtgtcagaacagcagagagatggacatgtagatatagatgtgtcagaacagcagagaTATGAACATGTAGATAtagatgtgtcagaacagcagagagatggacatgtagatatagatgtgtcagaacagcagagagatgaacatgtagatagagatgtgtcagaacagcagagagatgaaCATGAGATGGACATGTAGATAgagatgtgtcagaacagcagagagatagacatgtagatagagatgtgtcagaacagcagagagatgaaCATAGATATAGTtgtgtcagaacagcagagagatggacatagatatagatgtgtcagaacagcagaaAGATGAACATGTAGATAgagatgtgtcagaacagcagagTGATGGACATGTAGATAtagatgtgtcagaacagcagagagatgaacatgtagatagagatgtgtcagaacagcagagagatggacatgcagatagagatgtgtcagaacagcagagagatgaacatgcagatagagatgtcagaacagcagagagatgaTCATTTAGATAgagatgtgtcagaacagcagagagatggacatgtagatatagatgtgtcagaacagcagagagatggacatgtagatatagatgtgtcagaacagcagagaTACGAACATGTAGATAtagatgtgtcagaacagcaAAGAGATGGACATGTAGATAtagatgtgtcagaacagcagagagaaggacatgtagatatagatgtgtcagaacagcagagagaaggacatgtagatagagatgtgtcagaacagcagagagatgaacatgtagatagagatgtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333886 lncRNA downstream 30448 72540568 ~ 72540801 (-) True G294385
TU333881 lncRNA downstream 34999 72536047 ~ 72536250 (-) True G294380
TU333878 lncRNA downstream 39991 72531003 ~ 72531258 (-) True G294377
TU333875 lncRNA downstream 44949 72525995 ~ 72526300 (-) True G294374
TU333862 lncRNA downstream 70559 72490872 ~ 72500690 (-) True LOC110520531
TU334012 lncRNA upstream 34480 72609912 ~ 72611224 (-) True G294470
TU334016 lncRNA upstream 36534 72611966 ~ 72612375 (-) True G294472
TU334021 lncRNA upstream 47745 72623177 ~ 72623637 (-) True G294477
TU334036 lncRNA upstream 67810 72643242 ~ 72645495 (-) False G294491
TU334038 lncRNA upstream 67810 72643242 ~ 72645495 (-) False G294491
XM_036975092.1 mRNA downstream 29121 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA downstream 33879 72493437 ~ 72537370 (-) False LOC110520531
XM_036975090.1 mRNA downstream 304599 72264378 ~ 72266650 (-) True LOC110520529
XM_036975087.1 mRNA downstream 364431 72121974 ~ 72206818 (-) False LOC110504660
XM_036975086.1 mRNA downstream 364431 72121975 ~ 72206818 (-) False LOC110504660
LOC110504707 mRNA upstream 201284 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 215872 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 215872 72791304 ~ 72826819 (-) False LOC110504714
XM_036975101.1 mRNA upstream 215872 72791304 ~ 72834464 (-) False LOC110504714
XM_036975105.1 mRNA upstream 215872 72791304 ~ 72834464 (-) False LOC110504714
TU333434 other downstream 364451 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 667341 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1531097 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1850658 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2463299 70107540 ~ 70107950 (-) True G291977
TU334284 other upstream 199975 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 300907 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 996860 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1056606 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 1056872 73632304 ~ 73633036 (-) True G296043

Expression Profile