Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00029520 |
| length | 1680 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 15 |
| gene id | XLOC_014977 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 40716975 ~ 40826024 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0007188 | adenylate cyclase-modulating G protein-coupled receptor signaling pathway | biological_process |
| GO:0007189 | adenylate cyclase-activating G protein-coupled receptor signaling pathway | biological_process |
| GO:0007204 | positive regulation of cytosolic calcium ion concentration | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0007166 | cell surface receptor signaling pathway | biological_process |
| GO:0030424 | axon | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0097643 | amylin receptor activity | molecular_function |
| GO:0008528 | G protein-coupled peptide receptor activity | molecular_function |
| GO:0004888 | transmembrane signaling receptor activity | molecular_function |
| GO:0004930 | G protein-coupled receptor activity | molecular_function |
| GO:0004948 | calcitonin receptor activity | molecular_function |
| id | description |
|---|---|
| ko04080 | Neuroactive ligand-receptor interaction |
| ko04380 | Osteoclast differentiation |
| ko04030 | G protein-coupled receptors |
| id | description |
|---|---|
| ZDB-GENE-060503-420 | Predicted to enable calcitonin receptor activity. Predicted to contribute to amylin receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in several structures, including eye; gill; heart; integument; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in osteoporosis. Orthologous to human CALCR (calcitonin receptor). |
| ensembl_id | ENSDART00000189038 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030327 | lncRNA | downstream | 389020 | 40323961 ~ 40328584 (-) | True | XLOC_014975 |
| TCONS_00029793 | lncRNA | downstream | 958744 | 39755827 ~ 39758860 (-) | False | XLOC_014970 |
| TCONS_00029794 | lncRNA | downstream | 958744 | 39755906 ~ 39758860 (-) | False | XLOC_014970 |
| TCONS_00029795 | lncRNA | downstream | 958744 | 39756742 ~ 39758860 (-) | True | XLOC_014970 |
| TCONS_00030326 | lncRNA | downstream | 958746 | 39754776 ~ 39758858 (-) | False | XLOC_014970 |
| TCONS_00030328 | lncRNA | upstream | 133508 | 40909775 ~ 40985253 (-) | False | XLOC_014981 |
| TCONS_00029796 | lncRNA | upstream | 144885 | 40921152 ~ 40922192 (-) | True | XLOC_014982 |
| TCONS_00030329 | lncRNA | upstream | 164843 | 40941110 ~ 40970080 (-) | False | XLOC_014981 |
| TCONS_00030330 | lncRNA | upstream | 164843 | 40941110 ~ 40970142 (-) | False | XLOC_014981 |
| TCONS_00030331 | lncRNA | upstream | 167637 | 40943904 ~ 40985308 (-) | True | XLOC_014981 |
| TCONS_00029516 | mRNA | downstream | 518506 | 40196462 ~ 40199098 (-) | False | XLOC_014974 |
| TCONS_00029515 | mRNA | downstream | 518523 | 40196462 ~ 40199081 (-) | False | XLOC_014974 |
| TCONS_00029517 | mRNA | downstream | 519126 | 40196585 ~ 40198478 (-) | True | XLOC_014974 |
| TCONS_00029513 | mRNA | downstream | 525355 | 40186677 ~ 40192249 (-) | False | XLOC_014973 |
| TCONS_00029514 | mRNA | downstream | 526246 | 40187528 ~ 40191358 (-) | True | XLOC_014973 |
| TCONS_00029523 | mRNA | upstream | 71842 | 40848109 ~ 40855106 (-) | True | XLOC_014979 |
| TCONS_00029524 | mRNA | upstream | 123643 | 40899910 ~ 40906161 (-) | True | XLOC_014980 |
| TCONS_00029525 | mRNA | upstream | 164864 | 40941131 ~ 40985319 (-) | False | XLOC_014981 |
| TCONS_00029526 | mRNA | upstream | 166936 | 40943203 ~ 40985308 (-) | False | XLOC_014981 |
| TCONS_00029527 | mRNA | upstream | 262401 | 41038668 ~ 41052240 (-) | False | XLOC_014983 |
| TCONS_00029518 | other | downstream | 80913 | 40636572 ~ 40636691 (-) | True | XLOC_014976 |
| TCONS_00029512 | other | downstream | 531341 | 40182734 ~ 40186263 (-) | True | XLOC_014972 |
| TCONS_00029505 | other | downstream | 1513869 | 39203618 ~ 39203735 (-) | True | XLOC_014966 |
| TCONS_00029497 | other | downstream | 2253191 | 38464295 ~ 38464413 (-) | True | XLOC_014962 |
| TCONS_00029496 | other | downstream | 2253355 | 38464127 ~ 38464249 (-) | True | XLOC_014961 |
| TCONS_00029522 | other | upstream | 4901 | 40781168 ~ 40781271 (-) | True | XLOC_014978 |
| TCONS_00029535 | other | upstream | 576555 | 41352822 ~ 41371978 (-) | False | XLOC_014985 |
| TCONS_00029546 | other | upstream | 1396847 | 42173114 ~ 42173228 (-) | True | XLOC_014994 |
| TCONS_00029578 | other | upstream | 1819001 | 42595268 ~ 42595384 (-) | True | XLOC_015011 |
| TCONS_00029580 | other | upstream | 1902097 | 42678364 ~ 42678480 (-) | True | XLOC_015013 |
