RNA id: TU334043


Basic Information

Item Value
RNA id TU334043
length 1692
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G294491
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72643242 ~ 72645495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccacacacccacacgccCACACGAGAACTAACCGTTAATAACACACTACTTGTAAACAATAcaagaaaaaaggaaaaaaatgtatatttaaaaaaacaagcctTTTCTTTGTAAAATGAACAACAGTTCATTTTTACAATGGCACTTTTTTTGCAGAGGAAAGGTAcaaaaaatgtattgctttttaaAAACAAACCAATGTCTCAGACAGGGTGTTTTTGAGTCTGTGTCAGTTTGCAGATAATTCTGAGGCAGAGGAGGTGGCAAAGCAGAGAGTAACAGAACAACTGGTGCAAAGCAGAGAGTAACAGAACAACTGGTGCAAAGCAGAGAGTAACAGAACAACTGGTGCAAAGCAGAGAGTAACAGAACAACTGGTGCAAAGCAGAGAGTAACAGAACAACTGGTGCAAAGCAGAGAGAGTGAAAAGAAACAGAATACAGAAGACTGGAAGAGAGGTCTTTGCTTTCTGCTTCCAAACCCTGTATGTCAAAGAACGAGGAAGAATGCAGTGGAGACAGCAAGGAGATTCCATGGCCATCTCTATGTCTCAGTCTGTCCTATACTGGGACGATTGGCATATTCACAGACCTAGTGGCCAGCTCTGCCATTACTCATGACTTTCAGTGGGTTCTGACCAATAGGGGCTACAGGAGGAGGGTTCCTGCCCCTCCCCCTACGACCCATGGAAAGTTGGACATTGTGCGATGGGCCAAGTTTGATTTTTCAAAGTGTAGCGCAGCCGATATCTGTGCTCTGTTCTGCTGACGATGTCACAACAGAAGGCAGGTTGGGCTCTGCTGATGTCAAAGTGAGAGATAGAGGGTTGTTGTGCTGATGTCACAATGACACAGAACTCTTTCACTGTGATGACACAAGGAGAGAGCACGTGTCCAGGTTATTGtcgtgttcaagacaactgggaaatggGAACTCTGACCTCCGACTTCAGTgccttcaagacaactggaaaatgggaaaaatagttttgaatggtcatccaactctaaaactctggcatctttctagaaCTCTGACTTTCCATGCTGAAGATCACAGACATCATGATTTGACCCAGATTTGACCCAGCTCCTCCCACAGGATCATGATGTAATAGTGGGATGATGTAACAGTGGCACAACAaacaggagcaggaggagcaaaACTGGATCTTAAATGGCATTCTATACTCCACATATTAGTATAATACCTTTGACctgtgcactatatggggaatagggtgtgatttgagaCTTGGCCAGAGCCTGCCGTGCCTTCTCCTACGTGATCTTCAGAGTGTTGCACTCTCCTACGTGATCTTCAGAGTGTTGCCCTCTCCTACGTGATCTTCAGAGTGCTGCCCTCTCCTACGTGATCTTCAGAGTGTTGCCCTCTCCTACGTGATCTTCAGAGTGCTGCCCTCTCCTACGTGATCTTCAGAGTGTATCCCTCTCCTACGTGATTTTCAGAGTGCTGCCCGTGATCTTCAGAGTGTTGTCCTCTCCTATGTGATCTTCAGAGTGTATCCCTCTCCTACGTGATCTTCAGAGTGTTGCCCTCTCCTACGTGATCTTCAGAGTGCTGCCCTCTCCTACGTGATCTTCAGAGTGCTGCCGTAGGTCTGCTGTACCACCACCTGCACGTTGTCCAGGATGAAGTCAAAGGCCATGCTCCATACAGACTCCACAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334021 lncRNA downstream 19605 72623177 ~ 72623637 (-) True G294477
TU334016 lncRNA downstream 30867 72611966 ~ 72612375 (-) True G294472
TU334012 lncRNA downstream 32018 72609912 ~ 72611224 (-) True G294470
TU333886 lncRNA downstream 102441 72540568 ~ 72540801 (-) True G294385
TU333881 lncRNA downstream 106992 72536047 ~ 72536250 (-) True G294380
TU334046 lncRNA upstream 79 72645574 ~ 72646033 (-) True G294494
TU334047 lncRNA upstream 1455 72646950 ~ 72647158 (-) True G294495
TU334200 lncRNA upstream 16230 72661725 ~ 72663243 (-) True G294626
TU334219 lncRNA upstream 41480 72686975 ~ 72687967 (-) True G294642
TU334224 lncRNA upstream 44692 72690187 ~ 72690510 (-) True G294644
XM_036975092.1 mRNA downstream 101114 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA downstream 105872 72493437 ~ 72537370 (-) False LOC110520531
XM_036975090.1 mRNA downstream 376592 72264378 ~ 72266650 (-) True LOC110520529
XM_036975086.1 mRNA downstream 436424 72121975 ~ 72206818 (-) False LOC110504660
LOC110504707 mRNA upstream 131221 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 145809 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 145809 72791304 ~ 72826819 (-) False LOC110504714
XM_036975101.1 mRNA upstream 145809 72791304 ~ 72834464 (-) False LOC110504714
XM_036975105.1 mRNA upstream 145809 72791304 ~ 72834464 (-) False LOC110504714
TU333986 other downstream 67810 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 436444 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 739334 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1603090 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1922651 70720036 ~ 70720591 (-) True G292753
TU334284 other upstream 129912 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 230844 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 926797 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 986543 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 986809 73632304 ~ 73633036 (-) True G296043

Expression Profile