RNA id: TU334219



Basic Information


Item Value
RNA id TU334219
length 969
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G294642
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72686975 ~ 72687967 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGCAGGAGGGGTCCACTCTGCCCGTTTCTCCAAAAAGGCTGCCGTCCCTCCCACAGTCGATGGCCTGTCCCGGTCCACCCTCTTCTCTGTTGACACAGCCGCCCCCTCACTATTCCTCTGGTCGCCAGGGATCTTCTCACCTCTCACTAGGAGTTGGACTGGGGTTGCTGTTGGAGCTAAGGCTGGTTTGGGCTGGGGGATAGGGTTGAGATTTAGTGCGCTCCAAGGGGGCTGAGTGGAAGTTGCACCCATTGGGGCGATCCGTAGTGTTATCTGAGCTTGGGTCTGTGGAGTGGAGCAGAGGGTGGGCTGGTTTGCTCGTCGGCTGGACTGTGGGGTCACCTGAGACACGGCGCATTGTGTAGACTGGGCTAAAGGTTGAGTAGCGGTTGGTTGTGCTGCTCGAGTGTTGATTTGGTTGGATGTCTGTGTTGATGGTTTTGAGTTCTGTGTTGATTGTTGTGTCATTGTTTGTGGTTGTGTTCCGTTCTGTGTCCGTGGTGTTTTGGTGGTCTGCAGGTGTTTTGTGGTCTGTGTCACTGGTAGCTTTGTGGTCTGAGCCTGTGGTGGCGTTGTGGTCTGTGTCACTGGTAGTTTTGTGGTCTGTGTGGGGGCTTGTGCTGCTGTCTGTGGTGGTTTCACTGCATTCTGTGACTCCAGTAGTTTAGCAGTCAGGGgttgtgttgtggtctgagcCTGCGGTTGAGTTGGGGACTGCATGCCGGTGAACTCTCTGGGCAAACTGCTGGTGAAGAGCTGCTGGAGGCCCCTGGTCTTCCCCCATGCCATGCTCATCCACGATACGGCAGCCTGGGGTGCCGCATGGGGGGCAGTCAGGGGGTTCTGAGGGGCTGAGGTGGTAGCCTGGGCTTCTATGGGTAGGACAGGGAGGGTTTGGTCCTCTTTAGGTCTAGCTGGGGTGGTTTGGGCCTCTTTAATGAGAGGTGAGGGGGTAGGCTGGGCGGGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU334200 lncRNA downstream 23732 72661725 ~ 72663243 (-) True G294626
TU334047 lncRNA downstream 39817 72646950 ~ 72647158 (-) True G294495
TU334046 lncRNA downstream 40942 72645574 ~ 72646033 (-) True G294494
TU334036 lncRNA downstream 41480 72643242 ~ 72645495 (-) False G294491
TU334224 lncRNA upstream 2220 72690187 ~ 72690510 (-) True G294644
TU334228 lncRNA upstream 7502 72695469 ~ 72696023 (-) True G294648
TU334278 lncRNA upstream 76986 72764953 ~ 72799857 (-) True G294691
TU334303 lncRNA upstream 130639 72818606 ~ 72819652 (-) True G294714
TU334305 lncRNA upstream 131165 72819132 ~ 72821310 (-) False G294715
XM_036975092.1 mRNA downstream 144847 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA downstream 149605 72493437 ~ 72537370 (-) False LOC110520531
XM_036975090.1 mRNA downstream 420325 72264378 ~ 72266650 (-) True LOC110520529
XM_036975086.1 mRNA downstream 480157 72121975 ~ 72206818 (-) False LOC110504660
LOC110504707 mRNA upstream 88749 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 103337 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 103337 72791304 ~ 72826819 (-) False LOC110504714
XM_036975101.1 mRNA upstream 103337 72791304 ~ 72834464 (-) False LOC110504714
XM_036975105.1 mRNA upstream 103337 72791304 ~ 72834464 (-) False LOC110504714
TU333986 other downstream 111543 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 480177 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 783067 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1646823 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1966384 70720036 ~ 70720591 (-) True G292753
TU334284 other upstream 87440 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 188372 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 884325 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 944071 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 944337 73632304 ~ 73633036 (-) True G296043

Expression Profile