RNA id: TU334228


Basic Information

Item Value
RNA id TU334228
length 555
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G294648
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72695469 ~ 72696023 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttccatgggaagttaagccctggaatttggggaattttgcttaaattcttCAAACAATGTAGcttaacagtgaaccttttttttgtgggatacacaaggcaattataggtcttgtggcatattttggttaaaccctctgcatgcacagtgcactctttcatcacatgtacagcggattctcaagatcttgcacactaatgagatgctattgagcccacactactacactgtctgagccaacgACTACAtcctttctggtaagttttgattaaaATGCTGGGTGGGGTGAATCTATTTTAcatgacatacattattttttgttaactagtaaatagcagcctacagcaaagtgtgtttaaataatttctaacttgttaacaatttctgctagttagtttttgctgcCATGTGGGTTtcagcttgcttgagcctgctaactgaggagtgttaattcacctgtttccatacatgtttcattttaaaacatttatcttacaaaggagttgtttaatctaactgcttaactatttatctgtacatggaattgtatttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334224 lncRNA downstream 4959 72690187 ~ 72690510 (-) True G294644
TU334219 lncRNA downstream 7502 72686975 ~ 72687967 (-) True G294642
TU334200 lncRNA downstream 32226 72661725 ~ 72663243 (-) True G294626
TU334047 lncRNA downstream 48311 72646950 ~ 72647158 (-) True G294495
TU334046 lncRNA downstream 49436 72645574 ~ 72646033 (-) True G294494
TU334278 lncRNA upstream 68930 72764953 ~ 72799857 (-) True G294691
TU334303 lncRNA upstream 122583 72818606 ~ 72819652 (-) True G294714
TU334305 lncRNA upstream 123109 72819132 ~ 72821310 (-) False G294715
TU334304 lncRNA upstream 124503 72820526 ~ 72821310 (-) True G294715
TU334311 lncRNA upstream 134759 72830782 ~ 72831306 (-) True G294720
XM_036975092.1 mRNA downstream 153341 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA downstream 158099 72493437 ~ 72537370 (-) False LOC110520531
XM_036975090.1 mRNA downstream 428819 72264378 ~ 72266650 (-) True LOC110520529
XM_036975086.1 mRNA downstream 488651 72121975 ~ 72206818 (-) False LOC110504660
LOC110504707 mRNA upstream 80693 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 95281 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 95281 72791304 ~ 72826819 (-) False LOC110504714
XM_036975101.1 mRNA upstream 95281 72791304 ~ 72834464 (-) False LOC110504714
XM_036975105.1 mRNA upstream 95281 72791304 ~ 72834464 (-) False LOC110504714
TU333986 other downstream 120037 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 488671 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 791561 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1655317 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1974878 70720036 ~ 70720591 (-) True G292753
TU334284 other upstream 79384 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 180316 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 876269 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 936015 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 936281 73632304 ~ 73633036 (-) True G296043

Expression Profile