RNA id: TU334375



Basic Information


Item Value
RNA id TU334375
length 254
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G294763
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72893018 ~ 72893271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAACACAGCAGAAGAAATCGATGGCCAGAGTGATTGAGAAAACACCGGCATTGACTATCACGCCGCCTATTAAGCCGATCACAACACAGAATACGAGAGACAGCATCCAAGCCAGagtcacacacaccaccctgTACCTCAGAGGCCTGTACTTTAGGAAGAGCAGTGGGTGGACCACCGCCAGGTAGCGCTCCACACATATAAAGCACTGGAGCAGAGGGCGGCCGGCGCTGACCAAGCCGAACCTATAGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU334374 lncRNA downstream 481 72892337 ~ 72892537 (-) True G294762
TU334372 lncRNA downstream 5379 72885029 ~ 72887639 (-) True G294760
TU334349 lncRNA downstream 21128 72870893 ~ 72871890 (-) False LOC110520539
TU334311 lncRNA downstream 61712 72830782 ~ 72831306 (-) True G294720
TU334305 lncRNA downstream 71708 72819132 ~ 72821310 (-) False G294715
TU335499 lncRNA upstream 54737 72948008 ~ 72973805 (-) True G295738
TU335512 lncRNA upstream 69036 72962307 ~ 72962674 (-) True G295750
TU335515 lncRNA upstream 71377 72964648 ~ 72965770 (-) True G295753
TU335547 lncRNA upstream 153343 73046614 ~ 73049200 (-) True G295785
TU335559 lncRNA upstream 175477 73068748 ~ 73099306 (-) True G295797
XM_036975108.1 mRNA downstream 11754 72870852 ~ 72881264 (-) False LOC110520539
XM_036975104.1 mRNA downstream 54565 72791304 ~ 72838453 (-) True LOC110504714
XM_036975105.1 mRNA downstream 58554 72791304 ~ 72834464 (-) False LOC110504714
XM_036975111.1 mRNA upstream 132017 73025288 ~ 73034616 (-) False fhl2a
XM_036975112.1 mRNA upstream 132017 73025288 ~ 73039384 (-) True fhl2a
XM_036975115.1 mRNA upstream 269245 73162516 ~ 73266610 (-) True uxs1
XM_036975116.1 mRNA upstream 444899 73338170 ~ 73490996 (-) False st6gal2a
XR_005051374.1 mRNA upstream 444899 73338170 ~ 73490996 (-) False st6gal2a
TU334351 other downstream 12164 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 116411 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 317586 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 686220 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 989110 71903314 ~ 71903908 (-) True G293984
TU335813 other upstream 679021 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 738767 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 739033 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 879883 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 879883 73773154 ~ 73775299 (-) True G296102

Expression Profile