RNA id: TU335547


Basic Information

Item Value
RNA id TU335547
length 2587
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G295785
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73046614 ~ 73049200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCATTCATTGTCACATTAGTTTGTGTTATATTTGTAAGATGATTAGGAGTTCTACTTGGAAACAAGGTGATTCAATTGTTTATATATGGCACACATTCTTACAGATAAAAGTAAATCAAGTTACATTCAATGAAGGCAGTCATATGAGGTGCCCATATTGACTGCTTCCAACGTGACAAAAAACATAAACTCAACATTCAaccatttcaatgattttacagagttacagttcatagaaggaaatcagtcaattgaaatagatttattaggccctaatctttagatctcacatgactgggaatacagataatgcatctgttagtcacagatttcttaaaaaaaaagataggggcgtggatcagaaaaccagtctgtatctggtgtgacgACCATTTGCCTCATTCTGGGCGATCTCTCCTTCAGCGCGATCTCTccttagagttgatcaggctgttgattgtggcctgtggaatgttgtcccactcctcttcaatgggagtgtgaagtttctggatatttggtgggaacacactgtcatacacgtcattccagagcatcccaaacatgcttattaatgggtgacatgtctggtgagtatgcaggccatggaagaactgggagaCATGGGGCAGTGAtttatcatgttgaaacatggGGTGacggcggtggatgaatggcacaacagtcagcatgccaattgcacactccctcaaaacttaagacatctgtgacattgtgttgtgttaaaaaactgcacattttacagtgtaatgatcatgctattcaAACaacttattgatatgccacacctgtcaggtggatggataaccttggcaaaggagacatgctcactaacagggatgtaaacacattttttaacaaatttggagagaaataagctttttgtgcacatggaaaacttctgggatcttttattttagctctcgaaacatggtacaaacactttatatgttgcgtttatatttttgttcagtataatatcaAATCTAATATAACTAGCCTGATGTAGATTTAATTTAATCCAAGTGTTTTTAAGAGACACATTTgtacagagagaacaacagctaTGGCATGAAGTGAGAGGTGGATAACATGCTCAGTATGCATtgacaccagaggaggctggtgggaggagatgTGTGTATATGATATACGAGTGTCCTCTTGGGTATACCCATTTCAGTATGGATGTCCTCTCTGTTGTGGTCAACCCTGGAGAGGAGATGTGTGTATATGATATACGAGTGTCCTCTTGGGTATACCCATTTCAGTATGGATGTCCTCTCTGTTGTGGTCAACCCTGGAGAGGAGATGTGGAAcatgtagaaaacagtagaaataaagaaaaacccttgaatgagtcggtgtgtccaacgctttgactgctactgtacgTATGTTAATGCTTGgctagaacaaaagcctgcatcCATAACAGCTCACTCAATGTTCTCCAAAATTACCTCTGATTGCTCATTTGTGTCCCTCCTCCTTGTGACCTTGTGTCACGGCCGGTCCATCAAAGCAATTTCTATCAGGGGATCCATGTCAGTGTGCTGGAGCTCTGGCCGGTTCAAAGGTTGAAAAGGTTCCCCTTGCAGGGGATCAGCTGGGCTCTGGTGTAACCCAGGGATGGGCCTGTTTGGGGGGGAAATGATTAACGGTGGTCTGGTGATGACGGAGGCTGGGCGCCCTGACCTTTCCGTCCTGGCTGTATTTGCGGCATCGGTAAGCACCAGGCTTTAACAGCACCATGGATCCTGGTAGTGCCCAGACAGCTGCAGCGTTACCCCCCCGGCTGGGCTTATCGACTGGGCTGGTAGCCCAGGGATGAGGATACATGGGGGCCAGCGATGGGATGGGGGGGGTTGAGGGGGTGTAGAGTAGCATGGGGGAAAGGGGATGgtgtggggaggggagggaattAAGGGCTGGAACGAGGACGCATTGAGCTGGGCGAAGAGATGGGGTGGGGACGGGGAATTGAGGGGTTGGGAAGAGGGTCAAGGGCTGGGGCCAGGAATGGGGCTGGAGCCAAGCGCTGGGGCTAGGAGTGATATGAATTGTGTCAATATAATGTCAACATAAGCATCCTGGCATTGGCAGTGAATGAAATGAATGAAACATGACAGAACATCAATTAGTGAGTGTGGTAGTCGGGTTGACTTTAATTCCACACAGTGATTATCAGCATTACAGTCTAATTCACAGCTGAatctcagcacacacacacaccacgtaaCCTCTCCGATACGCtcccacagcacacacacaccacgttacctctccgatacgctccatcacacacaccacgtaACCTCTCCGAtacgctccatcacacacacacaccacgttacctcaccgatacgctccatcacacacaccacgttacctctctgatacgctccatcacacacaccacgttacctctccgatacgctccatcacacacaccacgttacctctctgatacgctccatcacacacacaccacgttacctctctgatacgctccatcacacacaccacgttacctctctgatacgctccatcacacacaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335499 lncRNA downstream 72809 72948008 ~ 72973805 (-) True G295738
TU335515 lncRNA downstream 80844 72964648 ~ 72965770 (-) True G295753
TU335512 lncRNA downstream 83940 72962307 ~ 72962674 (-) True G295750
TU334375 lncRNA downstream 153343 72893018 ~ 72893271 (-) True G294763
TU334374 lncRNA downstream 154077 72892337 ~ 72892537 (-) True G294762
TU335559 lncRNA upstream 19548 73068748 ~ 73099306 (-) True G295797
TU335589 lncRNA upstream 71465 73120665 ~ 73123169 (-) False G295823
TU335590 lncRNA upstream 71465 73120665 ~ 73123169 (-) False G295823
TU335591 lncRNA upstream 71465 73120665 ~ 73123169 (-) False G295823
TU335592 lncRNA upstream 71465 73120665 ~ 73123169 (-) False G295823
XM_036975112.1 mRNA downstream 7230 73025288 ~ 73039384 (-) True fhl2a
XM_036975111.1 mRNA downstream 11998 73025288 ~ 73034616 (-) False fhl2a
XM_036975108.1 mRNA downstream 165350 72870852 ~ 72881264 (-) False LOC110520539
XM_036975104.1 mRNA downstream 208161 72791304 ~ 72838453 (-) True LOC110504714
XM_036975105.1 mRNA downstream 212150 72791304 ~ 72834464 (-) False LOC110504714
XM_036975115.1 mRNA upstream 113316 73162516 ~ 73266610 (-) True uxs1
XM_036975116.1 mRNA upstream 288970 73338170 ~ 73490996 (-) False st6gal2a
XR_005051374.1 mRNA upstream 288970 73338170 ~ 73490996 (-) False st6gal2a
XM_036975117.1 mRNA upstream 288970 73338170 ~ 73505121 (-) True st6gal2a
XM_021584649.2 mRNA upstream 497999 73547199 ~ 73561315 (-) False LOC110505436
TU334351 other downstream 165760 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 270007 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 471182 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 839816 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 1142706 71903314 ~ 71903908 (-) True G293984
TU335813 other upstream 523092 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 582838 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 583104 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 723954 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 723954 73773154 ~ 73775299 (-) True G296102

Expression Profile