RNA id: TCONS_00030328


Basic Information

Item Value
RNA id TCONS_00030328
length 325
lncRNA type read_through
GC content 0.49
exon number 4
gene id XLOC_014981
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40909775 ~ 40985319 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACcgattatcatcatcatcatccatttGGAGATCTGAGATCAGATAAGggtCATAAAGTGAGCTTTCCACATGCCATGTCACATTTTCCACGGGGTCAGTGTGTGTGGGGGAAGTCGACTCAGCACATGAAGTCAGTCGAAGACCCAAACAAACCATTCTCTCCGTCCTTCTCCACTTTCATGGATGACGTGGCTGCAGACACCGGTTTTCTTGACCTCCCTGCACTGAGCGACACACACCTCCAGTtagaggaagaagaaaaaaacgATGTCAGAATCAGAGGTGTATTTTGCTGGACAATGGACCAGACGAGGAGCTGCGCA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0000049 tRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030327 lncRNA downstream 581191 40323961 ~ 40328584 (-) True XLOC_014975
TCONS_00029793 lncRNA downstream 1150915 39755827 ~ 39758860 (-) False XLOC_014970
TCONS_00029794 lncRNA downstream 1150915 39755906 ~ 39758860 (-) False XLOC_014970
TCONS_00029795 lncRNA downstream 1150915 39756742 ~ 39758860 (-) True XLOC_014970
TCONS_00030326 lncRNA downstream 1150917 39754776 ~ 39758858 (-) False XLOC_014970
TCONS_00030332 lncRNA upstream 460341 41445594 ~ 41468958 (-) False XLOC_014987
TCONS_00029539 lncRNA upstream 460341 41445594 ~ 41468979 (-) True XLOC_014987
TCONS_00030333 lncRNA upstream 508524 41493777 ~ 41506484 (-) True XLOC_014989
TCONS_00030334 lncRNA upstream 527489 41512742 ~ 41513258 (-) True XLOC_014990
TCONS_00030335 lncRNA upstream 738234 41723487 ~ 41730021 (-) False XLOC_014992
TCONS_00029524 mRNA downstream 3614 40899910 ~ 40906161 (-) True XLOC_014980
TCONS_00029523 mRNA downstream 54669 40848109 ~ 40855106 (-) True XLOC_014979
TCONS_00029519 mRNA downstream 83751 40716975 ~ 40826024 (-) False XLOC_014977
TCONS_00029521 mRNA downstream 133167 40717604 ~ 40776608 (-) True XLOC_014977
TCONS_00029520 mRNA downstream 133508 40717604 ~ 40776267 (-) False XLOC_014977
TCONS_00029527 mRNA upstream 53415 41038668 ~ 41052240 (-) False XLOC_014983
TCONS_00029528 mRNA upstream 53415 41038668 ~ 41069573 (-) False XLOC_014983
TCONS_00029529 mRNA upstream 53419 41038672 ~ 41052408 (-) False XLOC_014983
TCONS_00029530 mRNA upstream 53775 41039028 ~ 41069701 (-) True XLOC_014983
TCONS_00029531 mRNA upstream 205005 41190258 ~ 41199944 (-) False XLOC_014984
TCONS_00029522 other downstream 128504 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 273084 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 723512 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029505 other downstream 1706040 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 2445362 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029535 other upstream 367569 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 1187861 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 1610015 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 1693111 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 2044129 43029382 ~ 43030888 (-) True XLOC_015020

Expression Profile

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