RNA id: TU335598


Basic Information

Item Value
RNA id TU335598
length 1427
lncRNA type antisense_over
GC content 0.42
exon number 5
gene id G295823
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73120665 ~ 73123169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTGCAAAAACTTTTATTGAACATACGCATTTCAATTCTCATCACGTGATCAGCGGTACAGTACCATAGGTTGGATCAAAACGATTCATATATGCACATCTTCtgaatatatacatacagtgggaaCAAGAATTAAATAACAATGCTCAATGACATTCAGATATATTATATCTAATAAAAGCTGAGAACCCCATGACCGATACGTAGCAAGAAGTATATAAAAACCAAAAAACATATTACTCTTGAATTAGTGTCATCCATCAGCTACATTTACATATTGAGAGTAGAACGCCTGAAGACCTGATTTCATTGGAAAACAGCACTAGGGCCAATGAATAGCAGTACAGTAAGGGCTCAATTGATATAGCGGAAGTTCAGCGTTAAAGTGTGATTTAAATTGAAAGAATATGTTCTCGcattagcggagactgcattcacggtaaacactgCATCTTGTCAGCTCAAAtcagaaatgacctttacatCTCTAGCGTTCAATCTGTAATGCTTCAGCCATCCAGATTGAATCGAGAACTAAGTGTAGTGTAGAGCAGTGCAATTAGTGTACAGCAGGAGCCAATCAAATAGCAGTAGTGTAGAGCTTGGGCCAATGGAAAGACAGAACAATAAATGTAGTGCCAATAGAAAAGCAATACAGTAAGCAGGTGGCACATTGACAGTATCTCTCTCGAAGTTGAGTTCCGAGGAGGACGAaggcggagaaagagagggatagacgaGGACGAAGgcggaggaagagagggatagatgaGGATGAAGgcggaggaagagatggatagaTGAGGATGAAGagatggatagaTGAGGATGAAGgcggaggaagagatggatagaTGAGGATGAaggcggaggaagagagggatagacGAGGATGAaggcggaggaagagaTGGATAGATGAGGATGAAGAGATGGATAGATGAGGATGAAGAGATGGATAGATGAGGATGAAGAGATGGATAGATGAGGATGAAGagagggatagatgaGGATTAGGCAAAAGGAAGAAGAACACATCTAAAGAGTGTTTACAGTGGTCCCTTAGTGAACTTATTATTTCCTTTAGAAATCATCAGAACCTCTGGAGAgggtttacatttaaaaaataaaaataaaaaacaaaggaAACAGAACCAATACGAACTATGTGACTGGGCTAAAACAGACAGTAAGGTCTCTCCCCAAGTTCAGCATGTTGAGGATAGCTGGGGTGCGGGCAGCGGTTTGACCAGGTAGAGCTTGTCTCCTTGTTCACTGGTGAAGATGGGGGCTTTCTTGTAGTGTTCCACCAGTTCATCTATGGAGCTGAACTTGCGCTGGCCGATACAGTAGACCTCCTCTGAACACTGCACCTTGAAGTGCTTGTTCTTTCCAGGCGCcttcagagacacagagaaatcaCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335559 lncRNA downstream 21359 73068748 ~ 73099306 (-) True G295797
TU335547 lncRNA downstream 71465 73046614 ~ 73049200 (-) True G295785
TU335499 lncRNA downstream 146860 72948008 ~ 72973805 (-) True G295738
TU335612 lncRNA upstream 10305 73133474 ~ 73139783 (-) True G295832
TU335652 lncRNA upstream 93774 73216943 ~ 73217812 (-) True G295865
TU335771 lncRNA upstream 353685 73476854 ~ 73478556 (-) True G295979
TU335812 lncRNA upstream 448082 73571251 ~ 73571774 (-) True G296010
TU335814 lncRNA upstream 450481 73573650 ~ 73573923 (-) True G296012
XM_036975112.1 mRNA downstream 81281 73025288 ~ 73039384 (-) True fhl2a
XM_036975111.1 mRNA downstream 86049 73025288 ~ 73034616 (-) False fhl2a
XM_036975108.1 mRNA downstream 239401 72870852 ~ 72881264 (-) False LOC110520539
XM_036975104.1 mRNA downstream 282212 72791304 ~ 72838453 (-) True LOC110504714
XM_036975107.1 mRNA downstream 286201 72791304 ~ 72834464 (-) False LOC110504714
XM_036975115.1 mRNA upstream 39347 73162516 ~ 73266610 (-) True uxs1
XM_036975116.1 mRNA upstream 215001 73338170 ~ 73490996 (-) False st6gal2a
XR_005051374.1 mRNA upstream 215001 73338170 ~ 73490996 (-) False st6gal2a
XM_036975117.1 mRNA upstream 215001 73338170 ~ 73505121 (-) True st6gal2a
XM_021584649.2 mRNA upstream 424030 73547199 ~ 73561315 (-) False LOC110505436
TU334351 other downstream 239811 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 344058 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 545233 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 913867 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 1216757 71903314 ~ 71903908 (-) True G293984
TU335813 other upstream 449123 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 508869 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 509135 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 649985 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 649985 73773154 ~ 73775299 (-) True G296102

Expression Profile