RNA id: TU335612


Basic Information

Item Value
RNA id TU335612
length 5826
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G295832
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73133474 ~ 73139783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTgatctattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTGATCcattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTGATCcattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTGATCcattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTgatctattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTgatctattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACGCATTGAGTTTTCATGCaaagccaatatgctgtgataatagTATTGGGCCTATAGGTTATTGCACAAACTTCATTGCCAGTACTGTTTTTAATAGCTTAAATGTTGCATAGGATGATTAGattttttaagtcatgttaaaTCTGAACGGTAGAACCctgcttgcattttgactcagaaagtgatcctgactcagaaaaggttggtgaccactgatgtACATGATCCTAAAACGCATTGTGATCAGATTTTCCTGCCCACCTCCGGACGTAGTCAGGCACGCATTGCGTCTGGATATCTCACAAGTGTAAACGGATCTGGACAGTGAAACCATTTAATTCATAATTATCCCGCATTGTAATATAATTAACAGGTGGTAACATGGATGTATGACATCAATATATggcataaaataaataaatatattttattttgaaaGAATATTCGTCAAATAATTTACATACAAGGAGGCACCAGGAAATCTGGTCACAAAGTGGACACAGTGGACATGAGTGCGttcgtcaacgtgtgtgtgttttggagaaGCAAACAGCAGCTCCTTGTCTTGCCCAAGCTGGACAGGGACACACTGGCACAGGGCTAAAGCAGAGAAGTGCTAGAGTGTGAAGAAGGGGGAaggtgggggaggagacagagagacgagagacaAAGCAAGCGggacagatagggagagagaaaatacagGGACTCAAAGAAAGCGAGAAAAAGAGACTGTAAGGAAGAGAGGGAATagacagagggcagagagggaggaaggaatgtcAGAGAGGAGAAATGGATGACCCATGAGACTTCAGACTCATGTTACAGTCTTTGTCGTTTCCTCTTCAGTAGCAGCTTAAGCGCCCCCACCTCTCTTTACAACACTGAGCCAGACATAAACCCATCATACACTCTGCCTGACTGAAGCCTACAGTAGCTGCATTCCTTCACCAGGCACTCCTTGTTCCCCcatacacacaaactcacagcaATTAGTCCACAAAAGAAGGATGTGCAATCAGAGGTTTGAGACCATTCCCCCTGCTGTTCTGTTTCTTTCTGCTGGCTTACCGACCTCCTTCGTAGCAGCCCCCTTACCATGCAGATCAACCTGGTCTCATAGaatagatgtaacatagtaaatgtaaatctggcaCACTCAAATTAGCATGATATGTttagtttggtatggttacataagacagatgtttacttaaggcaaaaacaaaagtagggtgATTGGTTGGGGCGGATGGGTTGGCGTATAACGCGAACTTCTAACAACCAAAAAGGTTTAACCCTGACACCTAACccttagcctagctaatgttGCCACCTAGCTAGTATTCATAACATACCATAAGTTTAGCAAATTTGTAATATCATACGAAATGTGATGggcatccacaaatgaatacatactatACAAAACGTAGGATAtaatactaaatggagtgtctcggatttacatacagagtattacgaaatgctctgagaccaggttgtgcAGATAGAAGGCTCCAGGAGGTTTtctacagctccagtagaacagcAAAGCGCAGGGGATTTCTGGACACAGCAGTTTACTCTCCAGGAGAAAGAGCATTCTGCTCCGTAAGTACACTGCACCATGAAATGAGATTCAGTGTTGTGGCAGATGAGCCATGAGCAGAGAGGATTCTTGCTGTGGTACCGTATCACAAGAGTGTTGATTAGTAATCCTCTGATGAGGGGCTCTGTTGTATGTATGAACGGAGGTCGAATAGGGCCCATTCCAGTAACACTCACTGAGCACCACTTCTTTACTTGAACTACTGATCTATCTAATGGAGCCCTGGTCCAAGGCTGGATAAAGGTGGCAGTTTTATTTCAGTTTTCCGTTCCTCTCAGAAGCTACAGATGTCTCGTAGAACgaggacagccccccccccctcttctgtcCACCACCATTGCTCTCTGTCCAACTCAATCAACACTGTGCAGTCTTAATCAAAATTGTTGATCAAAGCCACTCAAGATCAAGATCAAGTCAGGTTTCTGATGCAAGAATCTGAATGTATGAGAATCAAACTGTTGAAAGATAATAACTTTGTAAGCTTTCCTGCTTTGACTAGATGACAAAGAAAAGCGCAATAAGCCATCAATTTGTTCAAAGGAGATTTATAGCATtaactgtgtgtgcatgcatgcctgTCTGCTACTAAATATGTTCAGGGTATAGTTTGATCAATGCAATATTCAGACAATAGTTAAAAGGCAGTGATTTTAAAACTTCTCCAAAGATTTAATTTGACCCAAACTTCATTCCGGTACCCCCTTAGATTCTTCTGTGTCTTCGTCGGGGCTGTCGTAACCTAGATAACTGGCAATAGGGAAGTGGGCCCAGTAGGTTCTGGCCAGGTCCTGGATCCGGTCGTAACCAGCCTGGGCAGTCAGCTCCTGCAACCAGCCTGTGAAGTCGGACGACCACAGGGCCCAGTTGGGCATTTCACGTTTTTCCCTGCCTTGCCTTCCTTTGTGGCAGTCTCTGTCTCTTCTGCTCCTGGATAAGACACAGTGAAGGGAAACGGAAAGAGTCAGACCTAAAGTCTAGTACTTTAGGACAGTATGGGTGACCGATCAGATCCTTTGTCAATAACTGGCCAAAAGATCAGAACTGGGTTGCCTGTGAAAAACACAGCCTATGAGTGGTACACTCAAAGGTGTTCACCTACCTGTGAAACTGAGGAATCCCAGGAGTATGAAGCAGACCAACATTGAGACACGCAGGCGATGCATGCTGTCAGACAAGGCTAtccagagatagacagagggacacagaaaCACTATTCAGTCGAACTGAATAGGCAGAGAGGCCAAGAGACACCGAAAAAACACATGCAGGCAGATACAGTAGCAAGAAAAAATGCTCAGTTTACCTTGAACTATCAAGGACTAATTTCCTCAAACCACCCAGAGAAAATAGAAACTGGAAGAAAGTTAAAGGCAGAAATAAATACAAagggaaaatacctgtctattgtGCTTCCAATGTTGTTACCAAGCCAACAAGTGCTCGAGGGCTAGATTCAGTCTGTAGCGCAGAAGATCCACGTTGTTGCGCAATTTAAGTGGAAAGGTAATTTCCCattgagctgacatatgcagcgtttaccgtgaatgcgggaacattgccttcaGGAATGGCCTTTTCCTCGTTATTCAGATTACAGCCTCTCGCttttggttatttgaaaatgaaatctccaaaatatcactttttttaaaacaagccatagaaaatTGGTTGCGATTTCAGTTCAATCCGCCAGAAAAGAgagaacaaatattatggttcaactcaaatatactaattgattaaaaaaactattttttggggagaaaaacaaacaaattatatattctttgtaaatgatatcataaacAAGACTGGTGGAGTTAtatcacacatgcagctaacaaaaatatatggaagtgtctgctctatccaaaattacaaccaactgattgcagcattaccacaaaaatagAAGAAGGAATTGGAAGGCGGAGAAACTAAGACAGGTGtcatttatactgataacaagttcaaacaggtgccaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcattCTTGTTtgcaggtgaccaaatacttattttccaccataatttgcaaataaattcataaaaaatcctacaatgtgattttctggattttctttctcattttgtctgtcatagttatgatgaaaattgcaggcctctctcatctttttaagtgggagaacttgcacaattgggggctgactaaatacttttttgcccaactgTATATTGGGGACACAACCATCCCAGCTAtgcagattttgctgcaaagagactcattagatcatttgttttggtactgtccatatgtagctgtttttggtcgcaggttcaggaatggctgaagaattgcaacatttacctggagttaACTCTGCAAATCGCACTGCTGGGTGATcggaaaagtcatagtcaatcgatcaatagtataataatactcttagttAAAATGttcatctttaatttacaatttgtagaaactatgagaatagaaaggttcagaacttttgtgaaacatcacagcacaattgaaaaatagATGGAAGGTCTTcatagatagatgggaggggttgagggtagcagaaggctgggactggaaggtctttagagacagatgggaggggttaagggtagcagaaggatgggactggatggtctttagagatagatgggaggggttaagGGTAGCAGAAGGATGGCACTAAAAACAAACAATAACTAATGTCAAATgcactgtgtctgtaaaatgtatatagtatgaaTAAGCTGGAAGTAAAAGCCTAAGTGCtgttgttcattagtttactccaattaggggagggaaaattaataaaggaaaatatatttcaaaacaatatatatatatttaaaataacatatatatttctaaaaaatatacatatatggGGGATTGTAAAAGATGCAGACAATCACATTcatagaagccacaatctatttgcaatattaaagctgatccaccccctaaaaaatatatttaaaaaattatacAAACATGGAGTATCCACAAAtgcaggaacattgcctttaaatctaAATTGCGCTACAGCGTAGATCTTCTACGCTACGGATTGAATCTAAGCCCTAGTCTAGAGTACACTACCTAACCAACCAATgtagagaaaaatacatttgtaCTAGAAATATGAAATATCAGGGAGAAAACCTTACCTGATTGAGATGACTGAGCCAAGGACTTTGTCCGTATTTGACCACAGTAAACTACAGCTACCTTCTCCTCTTTGATTGTACAGTAGTCTGCACCCGTTGAACGGTCTCTGTCCTGTGCTCTGGGGTTTCTGTCCATCCTCaggtgaggaggagacagaaaAAGGGCAGACATATTTGTTTTTCACACTTCCTCTCTGTATGTCTGACCTCCACCACAACATACTTCACTGGATCTCTCACACACCttacacacccgcacacacagtgATCTATGATACAAACTCTTTATTACCTGACTCTAGGCATAATGCTGACAACACTGCATTTGCAACGTTAGTAGACTACAGCATCAACCATGCATTACTATTAATGCTGACCAAACTGTGGTTTACCGTCAAGGAAATCTATCGTGAAGAATAAACATTTGGCACTGAGCATCAAATACAGTGTACCACCTCGGGGTTAAACATATCTGTTTGGAAAGAAcaggaagggagatggagagagggagaaaaatggGATCAAAATATAGACAGGCGGAAAAGGCAGCCAGGGGGGAAATAGAgacagacatgagagagagagagagagctgtgagagaCCAGTACACAGCCAGTCCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335589 lncRNA downstream 10305 73120665 ~ 73123169 (-) False G295823
TU335590 lncRNA downstream 10305 73120665 ~ 73123169 (-) False G295823
TU335591 lncRNA downstream 10305 73120665 ~ 73123169 (-) False G295823
TU335592 lncRNA downstream 10305 73120665 ~ 73123169 (-) False G295823
TU335596 lncRNA downstream 10305 73120665 ~ 73123169 (-) False G295823
TU335652 lncRNA upstream 77160 73216943 ~ 73217812 (-) True G295865
TU335771 lncRNA upstream 337071 73476854 ~ 73478556 (-) True G295979
TU335812 lncRNA upstream 431468 73571251 ~ 73571774 (-) True G296010
TU335814 lncRNA upstream 433867 73573650 ~ 73573923 (-) True G296012
TU335845 lncRNA upstream 488256 73628039 ~ 73628383 (-) True G296039
XM_036975112.1 mRNA downstream 94090 73025288 ~ 73039384 (-) True fhl2a
XM_036975111.1 mRNA downstream 98858 73025288 ~ 73034616 (-) False fhl2a
XM_036975108.1 mRNA downstream 252210 72870852 ~ 72881264 (-) False LOC110520539
XM_036975104.1 mRNA downstream 295021 72791304 ~ 72838453 (-) True LOC110504714
XM_036975107.1 mRNA downstream 299010 72791304 ~ 72834464 (-) False LOC110504714
XM_036975115.1 mRNA upstream 22733 73162516 ~ 73266610 (-) True uxs1
XM_036975116.1 mRNA upstream 198387 73338170 ~ 73490996 (-) False st6gal2a
XR_005051374.1 mRNA upstream 198387 73338170 ~ 73490996 (-) False st6gal2a
XM_036975117.1 mRNA upstream 198387 73338170 ~ 73505121 (-) True st6gal2a
XM_021584649.2 mRNA upstream 407416 73547199 ~ 73561315 (-) False LOC110505436
TU334351 other downstream 252620 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 356867 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 558042 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 926676 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 1229566 71903314 ~ 71903908 (-) True G293984
TU335813 other upstream 432509 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 492255 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 492521 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 633371 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 633371 73773154 ~ 73775299 (-) True G296102

Expression Profile