RNA id: TCONS_00030330


Basic Information

Item Value
RNA id TCONS_00030330
length 1035
lncRNA type sense_over
GC content 0.45
exon number 4
gene id XLOC_014981
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40909775 ~ 40985319 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGGTGATTcggctgaccaatcagagtcgttACATTAGTCAACGCTAAAAGTTTGGTTTGGGTTTTGTTTGACCGCGCGTCCCCTCTGAATGGTCGTGAGTTCTCTCACTATAAACAACTAAACGAGggtCATAAAGTGAGCTTTCCACATGCCATGTCACATTTTCCACGGGGTCAGTGTGTGTGGGGGAAGTCGACTCAGCACATGAAGTCAGTCGAAGACCCAAACAAACCATTCTCTCCGTCCTTCTCCACTTTCATGGATGACGTGGCTGCAGACACCGGTTTTCTTGACCTCCCTGCACTGAGCGACACACACCTCCAGTtagaggaagaagaaaaaaacggtAATGACACGTGTGGCGAGCCAAAGAGATTTAAGCATCGGCAGCTGAAGTTTGCAGCGCTTTTCTATCTGTTATTGCGGAGGACGACACTGAATGCGTCTTCACTCCTGCAGAGTCTCAGTCTGCCTGTCAGCTCTGGAAAACACAGCAGAAGCAGGAATGCAATCCTGAATCTTGTGGCCTGAAGCGAAACGCATATCGGTGGGACGTCATTCCTCTCAGCCCTCCTTCtacttctcctcctcctctttcatCACGGGCCTGTGCTCAGTGTATGTCACTCAGGGGCTTTCTTACAGGACCCTCGTTTTAGAGGGGGAGTGGTCCAGATTTAATGAAGGGGGAGGAGTTTATTGGTTAAAGGAAATATAGTTTTGAGAAACCCTGCCTTTGAGTGGCGTCTGCCCTCCGCCCATTTCTGAACTTTCACACTTCATGCTGTTCCACCagccaagcaaaaaaaaaaaaaaaaaagattgaagcCCCTTCATCAATGTGAAAACTTCCTCCTTTGAATCTGTTTGCATGTGTGACTGATTTGTTTAAGATAGCAGTTGCAATGGGAGTTTTTAGACAAAGGGAATTACATTTAAGtaataaagttaaaattaaagtaatatttaatgCAAATCATGAATTTGAACTGACACTGAAATTATAAAAGGTACAACGTAtgatttttgaaag

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0000049 tRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029796 lncRNA downstream 18918 40921152 ~ 40922192 (-) True XLOC_014982
TCONS_00030327 lncRNA downstream 612526 40323961 ~ 40328584 (-) True XLOC_014975
TCONS_00029793 lncRNA downstream 1182250 39755827 ~ 39758860 (-) False XLOC_014970
TCONS_00030332 lncRNA upstream 475452 41445594 ~ 41468958 (-) False XLOC_014987
TCONS_00029539 lncRNA upstream 475452 41445594 ~ 41468979 (-) True XLOC_014987
TCONS_00030333 lncRNA upstream 523635 41493777 ~ 41506484 (-) True XLOC_014989
TCONS_00030334 lncRNA upstream 542600 41512742 ~ 41513258 (-) True XLOC_014990
TCONS_00030335 lncRNA upstream 753345 41723487 ~ 41730021 (-) False XLOC_014992
TCONS_00029524 mRNA downstream 34949 40899910 ~ 40906161 (-) True XLOC_014980
TCONS_00029523 mRNA downstream 86004 40848109 ~ 40855106 (-) True XLOC_014979
TCONS_00029519 mRNA downstream 115086 40716975 ~ 40826024 (-) False XLOC_014977
TCONS_00029527 mRNA upstream 68526 41038668 ~ 41052240 (-) False XLOC_014983
TCONS_00029528 mRNA upstream 68526 41038668 ~ 41069573 (-) False XLOC_014983
TCONS_00029529 mRNA upstream 68530 41038672 ~ 41052408 (-) False XLOC_014983
TCONS_00029530 mRNA upstream 68886 41039028 ~ 41069701 (-) True XLOC_014983
TCONS_00029531 mRNA upstream 220116 41190258 ~ 41199944 (-) False XLOC_014984
TCONS_00029522 other downstream 159839 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 304419 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 754847 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029505 other downstream 1737375 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 2476697 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029535 other upstream 382680 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 1202972 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 1625126 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 1708222 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 2059240 43029382 ~ 43030888 (-) True XLOC_015020

Expression Profile

//