RNA id: TU335849


Basic Information

Item Value
RNA id TU335849
length 733
RNA type TUCP
GC content 0.55
exon number 1
gene id G296043
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73632038 ~ 73633036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGGGGGGGAGACACTGCGGTAGCTGGCTCGGAGGTATCAAATACAGGCCACTATTGAACGTTTATAGCGCTGCGGGAACCGTGTTTACTTTGCTTTGTTCCGGGTCAATGTGGACCGCGctgactttcaatgtagcaactGCTTGCTTGTGGAGGACTACAGGAGCGAAGTGGCTACTCGTAACAAGCAAGTAGCAAACATACACAAGCTACTGGGGAACACACGCCCGCCTAGTTTTTATCTTTCTTCCAACCCAGTTGCCGAACGCGGCACTAGTCTGGTGGAAGTTTCGCCGCCGTGTCGGCTCTATACAGCCAACTGGCCGGTGCTCTGCAGGGTTCCATCCCCGAAGGGGTCTCCCCCTTCCCTGGAGAACGGAGATGTTCTCgacccaaccaaccaaccatggATGTACGTCACTCGCAGTGGAAATCGAAGAAAGCATCCTCTGCCAACGGAGGTCTCCATGGAGATGTTGAACCCGGATCTGACAAAGACCAGAAACAGCTTTGCCGTTCCGGCGCCTTCTTCCTTGGGGGCTTCCCATTCAAGATCGGATCCGGAGGTACCTGCGTCTTTGTGCTCGGTTCTCCCTCTCCGGTGGCATCTACCTCGGGTTCAGATCCTCGGATCTCCCACCCTCATCAGACCGTGAAGCTGCTTGAGAGACCGGTGTCGTGCCTAAAATCTCCCCCCTGCCAGAATTCCCCCTTCGTTTGAACGCACACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335848 lncRNA downstream 343 73631659 ~ 73631961 (-) True G296042
TU335845 lncRNA downstream 3921 73628039 ~ 73628383 (-) True G296039
TU335814 lncRNA downstream 58381 73573650 ~ 73573923 (-) True G296012
TU335812 lncRNA downstream 60530 73571251 ~ 73571774 (-) True G296010
TU335771 lncRNA downstream 153748 73476854 ~ 73478556 (-) True G295979
TU335865 lncRNA upstream 26472 73659508 ~ 73660094 (-) True G296052
TU335704 lncRNA upstream 29186 73662222 ~ 73667390 (-) True LOC110520558
TU335868 lncRNA upstream 54622 73687658 ~ 73688154 (-) True G296055
TU335871 lncRNA upstream 64677 73697713 ~ 73699561 (-) True G296057
TU335883 lncRNA upstream 83269 73716305 ~ 73716793 (-) True G296068
XM_036975120.1 mRNA downstream 17774 73597442 ~ 73614530 (-) True LOC110520555
XM_036975122.1 mRNA downstream 17775 73597442 ~ 73614529 (-) False LOC110520555
XM_036975121.1 mRNA downstream 17887 73597442 ~ 73614417 (-) False LOC110520555
XM_036975118.1 mRNA downstream 18498 73597442 ~ 73613806 (-) False LOC110520555
XM_036975119.1 mRNA downstream 18530 73597442 ~ 73613774 (-) False LOC110520555
XM_036975124.1 mRNA upstream 9484 73642520 ~ 73651632 (-) True LOC110520557
XM_036975132.1 mRNA upstream 28960 73661996 ~ 73682161 (-) False LOC110520558
XM_036975148.1 mRNA upstream 28960 73661996 ~ 73682830 (-) False LOC110520558
XM_036975146.1 mRNA upstream 28960 73661996 ~ 73682833 (-) False LOC110520558
XM_036975134.1 mRNA upstream 28960 73661996 ~ 73682839 (-) False LOC110520558
TU335813 other downstream 59393 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 751450 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 855697 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 1056872 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 1425506 72173049 ~ 72206798 (-) True LOC110504660
TU335926 other upstream 140118 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 140118 73773154 ~ 73775299 (-) True G296102
TU335922 other upstream 175446 73808482 ~ 73809596 (-) True G296100
TU336010 other upstream 239937 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 244683 73877719 ~ 73880371 (-) True G296166

Expression Profile