RNA id: TU335883


Basic Information

Item Value
RNA id TU335883
length 489
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G296068
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73716305 ~ 73716793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AatattgtcttggtaagcaattccagtgtatatttggccttgtttaaggttattgtcctgctgaaaggtgaatttgtcctccagtgtctgttagaaagcagactgaaccagggtttcctctaggatatttccatagtccttgctgatgacaagcatacccataacatgatgcagtcaccaccatgcttgaaaatattaagtgtgatactcagtgatgtgttttgatggatttgccccaaacattatGCGTTTTATTTCTTtggcacattttttgcagtattactttagtgccttattgcaaacaggatgcatgctttggatttttttttattctgtacaattcttttcactctgtcgactaggttagtattgtagagtaactacaatgttgtttatccatcctcagttttctcctatcacagccattcaactctgtaactgttttaaagtcaccattgggctcatggtgaaatccctgaggggtttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335871 lncRNA downstream 16744 73697713 ~ 73699561 (-) True G296057
TU335868 lncRNA downstream 28151 73687658 ~ 73688154 (-) True G296055
TU335704 lncRNA downstream 48915 73662222 ~ 73667390 (-) True LOC110520558
TU335865 lncRNA downstream 56211 73659508 ~ 73660094 (-) True G296052
TU335848 lncRNA downstream 84344 73631659 ~ 73631961 (-) True G296042
TU335884 lncRNA upstream 379 73717172 ~ 73717461 (-) True G296069
TU335886 lncRNA upstream 3315 73720108 ~ 73720353 (-) True G296071
TU335887 lncRNA upstream 4368 73721161 ~ 73721509 (-) True G296072
TU335924 lncRNA upstream 53828 73770621 ~ 73810436 (-) False G296101
TU335923 lncRNA upstream 93092 73809885 ~ 73810436 (-) True G296101
XM_036975135.1 mRNA downstream 18943 73661996 ~ 73697362 (-) False LOC110520558
XM_036975143.1 mRNA downstream 18943 73661996 ~ 73697362 (-) False LOC110520558
XM_036975142.1 mRNA downstream 18968 73661996 ~ 73697337 (-) False LOC110520558
XM_036975153.1 mRNA upstream 22878 73739671 ~ 73759734 (-) True zgc:92313
XM_021597956.2 mRNA upstream 135291 73852084 ~ 73867970 (-) False LOC110520571
XM_021597957.2 mRNA upstream 135291 73852084 ~ 73868375 (-) True LOC110520571
XM_021597959.2 mRNA upstream 153696 73870489 ~ 73877384 (-) False LOC110520572
XM_021597958.2 mRNA upstream 153696 73870489 ~ 73877576 (-) False LOC110520572
TU335855 other downstream 83269 73632038 ~ 73633036 (-) False G296043
TU335849 other downstream 83269 73632304 ~ 73633036 (-) True G296043
TU335813 other downstream 143394 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 835451 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 939698 72775407 ~ 72776607 (-) True G294697
TU335926 other upstream 56361 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 56361 73773154 ~ 73775299 (-) True G296102
TU335922 other upstream 91689 73808482 ~ 73809596 (-) True G296100
TU336010 other upstream 156180 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 160926 73877719 ~ 73880371 (-) True G296166

Expression Profile