RNA id: TU335887



Basic Information


Item Value
RNA id TU335887
length 349
lncRNA type intronic
GC content 0.44
exon number 1
gene id G296072
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73721161 ~ 73721509 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atcaaaatctctctgtactttgctcagttcatctttgcctcgatcctgactggtctcccagtccctgccgctgaaaaacttccccacagcatgatgctgccatcaccatgctttaccgtagggatggtgccaggtttactccataagtcttggtttcatcagaccagagaccaTGTTaattatggtctgagagtctttaggtgcctttccaaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatcatcaattgaaacaggatgcacctgagctcaatttcgattcgcatagcaaagggtctgaatacttattta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU335886 lncRNA downstream 808 73720108 ~ 73720353 (-) True G296071
TU335884 lncRNA downstream 3700 73717172 ~ 73717461 (-) True G296069
TU335883 lncRNA downstream 4368 73716305 ~ 73716793 (-) True G296068
TU335871 lncRNA downstream 21600 73697713 ~ 73699561 (-) True G296057
TU335868 lncRNA downstream 33007 73687658 ~ 73688154 (-) True G296055
TU335924 lncRNA upstream 49112 73770621 ~ 73810436 (-) False G296101
TU335923 lncRNA upstream 88376 73809885 ~ 73810436 (-) True G296101
TU335957 lncRNA upstream 90445 73811954 ~ 73813130 (-) True G296117
TU335961 lncRNA upstream 96013 73817522 ~ 73818469 (-) True G296120
TU335970 lncRNA upstream 102683 73824192 ~ 73824664 (-) True G296129
XM_036975135.1 mRNA downstream 23799 73661996 ~ 73697362 (-) False LOC110520558
XM_036975143.1 mRNA downstream 23799 73661996 ~ 73697362 (-) False LOC110520558
XM_036975142.1 mRNA downstream 23824 73661996 ~ 73697337 (-) False LOC110520558
XM_036975153.1 mRNA upstream 18162 73739671 ~ 73759734 (-) True zgc:92313
XM_021597956.2 mRNA upstream 130575 73852084 ~ 73867970 (-) False LOC110520571
XM_021597957.2 mRNA upstream 130575 73852084 ~ 73868375 (-) True LOC110520571
XM_021597959.2 mRNA upstream 148980 73870489 ~ 73877384 (-) False LOC110520572
XM_021597958.2 mRNA upstream 148980 73870489 ~ 73877576 (-) False LOC110520572
TU335855 other downstream 88125 73632038 ~ 73633036 (-) False G296043
TU335849 other downstream 88125 73632304 ~ 73633036 (-) True G296043
TU335813 other downstream 148250 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 840307 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 944554 72775407 ~ 72776607 (-) True G294697
TU335926 other upstream 51645 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 51645 73773154 ~ 73775299 (-) True G296102
TU335922 other upstream 86973 73808482 ~ 73809596 (-) True G296100
TU336010 other upstream 151464 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 156210 73877719 ~ 73880371 (-) True G296166

Expression Profile