RNA id: TU335924


Basic Information

Item Value
RNA id TU335924
length 506
lncRNA type read_through
GC content 0.44
exon number 3
gene id G296101
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73770621 ~ 73810436 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAATCCCATTCTATTTAAGTATAGCACAATATTACATAAGTACTGTTTAACCTCTACGCATGTACAGGTATAAAGGCACCTGAGTCACCTTATTACAATACATTCTATAGCGTCTATCTGAGTCCAAAACGTGTATGCGTGATCTAGAATATTGGAACATTAGCTTTCATACTTTTCTCAGCGTGGCTCAAGCAATTTCTCCAACCGTCAACACATTCAAATTAATATAGGATGCGTACGCAGAGCCGTGTTTGTTGGGAAATTTGGGCAGATGCTCGTTTGGGCAGTGGTCTCAGAGACCCGTAGTTGTCACAATGGGATGCTGGACTATCGCGTCTCTGGACTCAATTACGCTTAATAATCCTTTTGGTGTCACTTCTCGTCCAAAGGCAAACAGACAGAGACCGTttgtggagacagacagacagtggagacCGAAAAACTGAGGAAAagggagacggacagacaggcaggtTTCAGAcagacagacagacagacaggcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335887 lncRNA downstream 49112 73721161 ~ 73721509 (-) True G296072
TU335886 lncRNA downstream 50268 73720108 ~ 73720353 (-) True G296071
TU335884 lncRNA downstream 53160 73717172 ~ 73717461 (-) True G296069
TU335883 lncRNA downstream 53828 73716305 ~ 73716793 (-) True G296068
TU335871 lncRNA downstream 71060 73697713 ~ 73699561 (-) True G296057
TU335957 lncRNA upstream 1518 73811954 ~ 73813130 (-) True G296117
TU335961 lncRNA upstream 7086 73817522 ~ 73818469 (-) True G296120
TU335970 lncRNA upstream 13756 73824192 ~ 73824664 (-) True G296129
TU335982 lncRNA upstream 34851 73845287 ~ 73845978 (-) True G296141
TU336009 lncRNA upstream 60074 73870510 ~ 73871479 (-) False LOC110520572
XM_036975153.1 mRNA downstream 10887 73739671 ~ 73759734 (-) True zgc:92313
XM_036975135.1 mRNA downstream 73259 73661996 ~ 73697362 (-) False LOC110520558
XM_036975143.1 mRNA downstream 73259 73661996 ~ 73697362 (-) False LOC110520558
XM_036975142.1 mRNA downstream 73284 73661996 ~ 73697337 (-) False LOC110520558
XM_021597956.2 mRNA upstream 41648 73852084 ~ 73867970 (-) False LOC110520571
XM_021597957.2 mRNA upstream 41648 73852084 ~ 73868375 (-) True LOC110520571
XM_021597959.2 mRNA upstream 60053 73870489 ~ 73877384 (-) False LOC110520572
XM_021597958.2 mRNA upstream 60053 73870489 ~ 73877576 (-) False LOC110520572
XM_021597963.2 mRNA upstream 73105 73883541 ~ 73889222 (-) True LOC110520575
TU335855 other downstream 137585 73632038 ~ 73633036 (-) False G296043
TU335849 other downstream 137585 73632304 ~ 73633036 (-) True G296043
TU335813 other downstream 197710 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 889767 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 994014 72775407 ~ 72776607 (-) True G294697
TU336010 other upstream 62537 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 67283 73877719 ~ 73880371 (-) True G296166
TU336000 other upstream 160046 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 428751 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 2150111 75960547 ~ 75963074 (-) True G298065

Expression Profile