RNA id: TU335928


Basic Information

Item Value
RNA id TU335928
length 1927
RNA type TUCP
GC content 0.43
exon number 2
gene id G296102
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73773154 ~ 73775299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAAATATATTTTATTAATAAAACGGGTGTGATCCTGTGGAATAAAgaaatgaaacaaaaaataatCCTGAGATTTTAGTTCAGTTTTTCCTCCACTTCTTCCCTTTATTatcttgttttttaaaatatatatatatgtatatgattCATTTAAATTAATACAAATGTCGTAATTACATAAGGTTCTTCCTTGCCATACACCTTACAGTTCATTTGTTGATTGGAGTAATTACTAGCAAATAAAACAGGAAATCAGTGcgttataaaaaaaaatgatttgatgTAGCCTACTTTCACCACAAAGTAATAATTAAAATATGTAACACAGGGTCAAAACAATTCCATAATTACACACATACTCAACTCAACATGGGGTCATACAACCCAAGGGCACTTGTTTTCATGGTAAAACTTAGGTCCAGTTGATTCACACCAACCACAAGGTAATTCATCAACCTCCTTGAAAGGAGTTCTTCTGAATAGCATGGTAATAGCTTTCTGTTAGCCTCATGTAGGAGACTAAGACACAGTAGCTGTTGAAGAGAGGCCTTCACCACCTAGACACAGATCTTGATCCAGTCCTTTCAGGTCTTTACAGGGCCGTGGAGAAGTGACCCATGGGCCATGTTTCAGTTAGAAATTTGGTCTCATCATATTAtcttctgtccttgagctgttcttgtcaaatTAACttatgtccttgagctgttcttgtcaaatTAACttatgtccttgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtctattgagctgttcttgtggactccagaaagagtagctgctgcttttgcaacagttaATGGGGATGCTCATCAAATACCAAGACCAAGTCTAGGCCTAGTTTGTctatcaaataaaatcattttttGTATTTTCCAAATTCCGGTTATCAAGTGCACCAAGATCTGGTATTATTTTGATTGAGTAAATGTCCAAATTACTGAGCACCTTGGGCAGTTAACAACAGCCTGGAAATGGAGTAACATGAATGATTGTTTGTGAGGCATTAGAATCAAAGGGGAAATTATAGGGTAGTGCACCAGCATGGGATACTACTGAAGTAGGCTCCCTGTACCAGCAGATTAGCATTGAGGAGGATGGCTGTAATTCCCTTGGACAACCTGGAAATAGGACATGTTGGTCATCTTATGATTCGTCGTACTGGTCATTGTACCGATCATGCTGGTCATTAAGGCGGTCACGGCTGCCACCATGGCGAACAGGCGGGTCATCGAGGCGATCACGGCTGCCACCATGGCGAACAACAGGCGGGTCGTCAAGACGATCACGGCTGCCACCATGGCGAACAGGCGGGTCGTCGAGGCGATCACGGCTGCCACCATGGCGAACAACAGGTGGGTCGTCAAGGCGATCACGACTGCCACCATATCGAACACGCTGATCGTCGAGGCGATCGCGGCTGCCACCATAGCGATCGCGCTGGTCGTCGAGGCGATCGCGGCTGCCACCATAGCGATCGCGCTGATCTCCATAGTTGTTGCGGTTGTCATCAGACTTCTCCTTACGGCCATCACTGCAATCTGTTCTAACACTTTGGTCATCGTGATCCATCTCCCCTTGCGTCTCGTATTGGTCATGCAGCACGATGCTCCCCTCAGTCCTGTCTTCCGGTATGTCGTCCCGGTAACCTGCCCCAACGTTGAGTGTCGGCGTGTCATGGAACTTCACCACTTCTGGAACTCTGAGAAACAGAGACGACAGATatatatgagagacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335887 lncRNA downstream 51645 73721161 ~ 73721509 (-) True G296072
TU335886 lncRNA downstream 52801 73720108 ~ 73720353 (-) True G296071
TU335884 lncRNA downstream 55693 73717172 ~ 73717461 (-) True G296069
TU335883 lncRNA downstream 56361 73716305 ~ 73716793 (-) True G296068
TU335871 lncRNA downstream 73593 73697713 ~ 73699561 (-) True G296057
TU335923 lncRNA upstream 34586 73809885 ~ 73810436 (-) True G296101
TU335957 lncRNA upstream 36655 73811954 ~ 73813130 (-) True G296117
TU335961 lncRNA upstream 42223 73817522 ~ 73818469 (-) True G296120
TU335970 lncRNA upstream 48893 73824192 ~ 73824664 (-) True G296129
TU335982 lncRNA upstream 69988 73845287 ~ 73845978 (-) True G296141
XM_036975153.1 mRNA downstream 13420 73739671 ~ 73759734 (-) True zgc:92313
XM_036975135.1 mRNA downstream 75792 73661996 ~ 73697362 (-) False LOC110520558
XM_036975143.1 mRNA downstream 75792 73661996 ~ 73697362 (-) False LOC110520558
XM_036975150.1 mRNA downstream 75817 73661996 ~ 73697337 (-) False LOC110520558
XM_021597956.2 mRNA upstream 76785 73852084 ~ 73867970 (-) False LOC110520571
XM_021597957.2 mRNA upstream 76785 73852084 ~ 73868375 (-) True LOC110520571
XM_021597959.2 mRNA upstream 95190 73870489 ~ 73877384 (-) False LOC110520572
XM_021597958.2 mRNA upstream 95190 73870489 ~ 73877576 (-) False LOC110520572
XM_021597963.2 mRNA upstream 108242 73883541 ~ 73889222 (-) True LOC110520575
TU335855 other downstream 140118 73632038 ~ 73633036 (-) False G296043
TU335849 other downstream 140118 73632304 ~ 73633036 (-) True G296043
TU335813 other downstream 200243 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 892300 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 996547 72775407 ~ 72776607 (-) True G294697
TU335922 other upstream 33183 73808482 ~ 73809596 (-) True G296100
TU336010 other upstream 97674 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 102420 73877719 ~ 73880371 (-) True G296166
TU336000 other upstream 195183 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 463888 74239187 ~ 74239795 (-) True G296315

Expression Profile