RNA id: TU335957


Basic Information

Item Value
RNA id TU335957
length 978
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G296117
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73811954 ~ 73813130 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaagcttttatttctttcatcacattcccagtgggtgagaagtttacatacactcaattagtatttggtagaattgcctttaaattgtttaacttgggtcaaacgttttgggtagccttccacaagcatcccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaacggagtcaggtttgtaggcctccttgcacgcacacgctttttcagttctgcccacaaatgttctataggattgaggttggGGCTTTGTGActgcaactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggcatccccctttttcctccaaacataacgatggtcattatggccaaagagttatatttttgtttcaccagaccagaggacataactccaaaaagtacgatctttgtccccatatgcagttacAATCTGTATGgcagttttggaacagtggcttcttccttgctgagcggcctttcagtttatgtcgatataggactcgatatcggacttgtttaactgtgaatagagatacttttgtaccggtttcctccagcatcttcacaaggtcctttgctgttgttctgggattgatttgcattttcgcaccaaagtacgttcatctctaggagacagaacacatctccttcctgagcggtatgactgctgtgtggtcccatggtgtttatacttgcgtactattgtttgtaaagatgaacatggtaccttcaggcatttggaaatagcttgcaaggatgaatcagacttgtggaggtctacaatttggctgatttcttttgattttcccaagatgtcaagaaaagaggcgctgagtttgaaggtaggccttgaaatacatccacaagtacacctccaattgactcaaatgatgtcaattagcctatcagaactttactttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335924 lncRNA downstream 1518 73770621 ~ 73810436 (-) False G296101
TU335923 lncRNA downstream 1518 73809885 ~ 73810436 (-) True G296101
TU335887 lncRNA downstream 90445 73721161 ~ 73721509 (-) True G296072
TU335886 lncRNA downstream 91601 73720108 ~ 73720353 (-) True G296071
TU335884 lncRNA downstream 94493 73717172 ~ 73717461 (-) True G296069
TU335961 lncRNA upstream 4392 73817522 ~ 73818469 (-) True G296120
TU335970 lncRNA upstream 11062 73824192 ~ 73824664 (-) True G296129
TU335982 lncRNA upstream 32157 73845287 ~ 73845978 (-) True G296141
TU336009 lncRNA upstream 57380 73870510 ~ 73871479 (-) False LOC110520572
TU336011 lncRNA upstream 59095 73872225 ~ 73872570 (-) True G296164
XM_036975153.1 mRNA downstream 52220 73739671 ~ 73759734 (-) True zgc:92313
XM_036975135.1 mRNA downstream 114592 73661996 ~ 73697362 (-) False LOC110520558
XM_036975143.1 mRNA downstream 114592 73661996 ~ 73697362 (-) False LOC110520558
XM_036975150.1 mRNA downstream 114617 73661996 ~ 73697337 (-) False LOC110520558
XM_021597956.2 mRNA upstream 38954 73852084 ~ 73867970 (-) False LOC110520571
XM_021597957.2 mRNA upstream 38954 73852084 ~ 73868375 (-) True LOC110520571
XM_021597959.2 mRNA upstream 57359 73870489 ~ 73877384 (-) False LOC110520572
XM_021597958.2 mRNA upstream 57359 73870489 ~ 73877576 (-) False LOC110520572
XM_021597963.2 mRNA upstream 70411 73883541 ~ 73889222 (-) True LOC110520575
TU335922 other downstream 2358 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 36655 73773154 ~ 73775299 (-) False G296102
TU335928 other downstream 36655 73773154 ~ 73775299 (-) True G296102
TU335855 other downstream 178918 73632038 ~ 73633036 (-) False G296043
TU336010 other upstream 59843 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 64589 73877719 ~ 73880371 (-) True G296166
TU336000 other upstream 157352 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 426057 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 2147417 75960547 ~ 75963074 (-) True G298065

Expression Profile