RNA id: TU335970



Basic Information


Item Value
RNA id TU335970
length 388
lncRNA type intronic
GC content 0.36
exon number 2
gene id G296129
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73824192 ~ 73824664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATAGAATATAGTGGTCACTTTGAAGACTGTTGTTTGAGAAGACAACGAATTAAAATGCCAGGGAGAAGTTATTGTGACAGGATAGGAACTGAAGTGTTgataagtgtttcctaggggaccctgtaaattagctacttcatgtagctaacatatgcttgctttgcatattcctctttgatttagaacatactgttgcacaaacaacatCTCGCTAGCTATTAGCATTAGCGACTAACAATTAGCATCTCACAAGATTTAgggcaacttgctaagaaaagacaaactagctggtTGCTGATGTatgaaacacaaactaatagtgtcattatagaacgctagtggatttatattaagaagcaaagtgaaaacaacATTGTTTTCCTCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU335961 lncRNA downstream 5723 73817522 ~ 73818469 (-) True G296120
TU335957 lncRNA downstream 11062 73811954 ~ 73813130 (-) True G296117
TU335924 lncRNA downstream 13756 73770621 ~ 73810436 (-) False G296101
TU335923 lncRNA downstream 13756 73809885 ~ 73810436 (-) True G296101
TU335887 lncRNA downstream 102683 73721161 ~ 73721509 (-) True G296072
TU335982 lncRNA upstream 20623 73845287 ~ 73845978 (-) True G296141
TU336009 lncRNA upstream 45846 73870510 ~ 73871479 (-) False LOC110520572
TU336011 lncRNA upstream 47561 73872225 ~ 73872570 (-) True G296164
TU336012 lncRNA upstream 48070 73872734 ~ 73872956 (-) True G296165
TU336050 lncRNA upstream 104197 73928861 ~ 73929759 (-) True G296193
XM_036975153.1 mRNA downstream 64458 73739671 ~ 73759734 (-) True zgc:92313
XM_036975135.1 mRNA downstream 126830 73661996 ~ 73697362 (-) False LOC110520558
XM_036975143.1 mRNA downstream 126830 73661996 ~ 73697362 (-) False LOC110520558
XM_036975150.1 mRNA downstream 126855 73661996 ~ 73697337 (-) False LOC110520558
XM_021597956.2 mRNA upstream 27420 73852084 ~ 73867970 (-) False LOC110520571
XM_021597957.2 mRNA upstream 27420 73852084 ~ 73868375 (-) True LOC110520571
XM_021597959.2 mRNA upstream 45825 73870489 ~ 73877384 (-) False LOC110520572
XM_021597958.2 mRNA upstream 45825 73870489 ~ 73877576 (-) False LOC110520572
XM_021597963.2 mRNA upstream 58877 73883541 ~ 73889222 (-) True LOC110520575
TU335922 other downstream 14596 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 48893 73773154 ~ 73775299 (-) False G296102
TU335928 other downstream 48893 73773154 ~ 73775299 (-) True G296102
TU335855 other downstream 191156 73632038 ~ 73633036 (-) False G296043
TU336010 other upstream 48309 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 53055 73877719 ~ 73880371 (-) True G296166
TU336000 other upstream 145818 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 414523 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 2135883 75960547 ~ 75963074 (-) True G298065

Expression Profile