RNA id: TCONS_00029796


Basic Information

Item Value
RNA id TCONS_00029796
length 872
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id XLOC_014982
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 40921152 ~ 40922192 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cactgttgtatttacagaagttttatgagaataagctacaggttgatttatactaatctgttatttttcttttttagcacgactgactgaagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaaccaaaacagacgtgatgaaattccgcATGTAAACagatttgaccttcctttggccaattggatttggaaaagcttgaaaatcaactaaagaagcagcccgaacaaatgaagaaactgatggagtgaggacaaatgtccataccacgccactgataaagaagtggaaaaatacattacaaggtagctacaacttgcccctgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttaatttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatatatatatatgtatatgtatatatttatgtgtgtgtgtgtatatatgtatggaatgtatgtatgtatgtgtgtgcgccaaattgtaaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaatataaaattgcacaagacgtgtatatatatgaaatttataatcatctcactcatgtcttgtatatatatatatatatatatatttgtttgtttattattattttaatgttttattaaaaaatgtttcaagatgtttcttcagaattctgcagtactttttacaagtttgacttggatattttacggattgtcattggtatttttaagatgtttcttgctatatcttaaattggtttctatatttagg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0035295 tube development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0046619 optic placode formation involved in camera-type eye formation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030327 lncRNA downstream 592568 40323961 ~ 40328584 (-) True XLOC_014975
TCONS_00029793 lncRNA downstream 1162292 39755827 ~ 39758860 (-) False XLOC_014970
TCONS_00029794 lncRNA downstream 1162292 39755906 ~ 39758860 (-) False XLOC_014970
TCONS_00029795 lncRNA downstream 1162292 39756742 ~ 39758860 (-) True XLOC_014970
TCONS_00030326 lncRNA downstream 1162294 39754776 ~ 39758858 (-) False XLOC_014970
TCONS_00030329 lncRNA upstream 18918 40941110 ~ 40970080 (-) False XLOC_014981
TCONS_00030330 lncRNA upstream 18918 40941110 ~ 40970142 (-) False XLOC_014981
TCONS_00030331 lncRNA upstream 21712 40943904 ~ 40985308 (-) True XLOC_014981
TCONS_00030332 lncRNA upstream 523402 41445594 ~ 41468958 (-) False XLOC_014987
TCONS_00029539 lncRNA upstream 523402 41445594 ~ 41468979 (-) True XLOC_014987
TCONS_00029524 mRNA downstream 14991 40899910 ~ 40906161 (-) True XLOC_014980
TCONS_00029523 mRNA downstream 66046 40848109 ~ 40855106 (-) True XLOC_014979
TCONS_00029519 mRNA downstream 95128 40716975 ~ 40826024 (-) False XLOC_014977
TCONS_00029525 mRNA upstream 18939 40941131 ~ 40985319 (-) False XLOC_014981
TCONS_00029526 mRNA upstream 21011 40943203 ~ 40985308 (-) False XLOC_014981
TCONS_00029527 mRNA upstream 116476 41038668 ~ 41052240 (-) False XLOC_014983
TCONS_00029528 mRNA upstream 116476 41038668 ~ 41069573 (-) False XLOC_014983
TCONS_00029529 mRNA upstream 116480 41038672 ~ 41052408 (-) False XLOC_014983
TCONS_00029522 other downstream 139881 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 284461 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 734889 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029505 other downstream 1717417 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 2456739 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029535 other upstream 430630 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 1250922 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 1673076 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 1756172 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 2107190 43029382 ~ 43030888 (-) True XLOC_015020

Expression Profile

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