RNA id: TCONS_00029527


Basic Information

Item Value
RNA id TCONS_00029527
length 695
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_014983
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41038668 ~ 41069701 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTTCATCATCCTGGGATACTCCATGTGCTGTCGACGGGAAGGGGTCATTCAGCTGGTTCACCACAGCTCCATTCAGAAGTCCACTAAGGAGCTCCGCGGGATGTCGAAGAACCGGGAGATTTCGTGGCCTCTCTCCACACTGCCAGTTTTCCATCCTGTGAGCGGAGAGGTGGTGCCGCCGATCCATCCTGACAACTACGAGACCACTAGCATGCCACTTATGCAGACGCAGACaaatttacagaatCAGATCCAAATACCACAGCAGCAGACTTCTGGAGATAATTATTGTATGTCCACTTTTCGGAGGCTAGAGGTAAATGGTATTCCTGAGGAGCGGAAGGTGGCCGAAGCTCTGAACTTGTGATTTTACGTGGATTCACTTTTGTATGAGTTTAATTGTGCCAAATGTGCATGTGTACAGTAGCTGTAGCAAAACAAGCTCAACGACTGCATGTTCATGCACACGTCTGGAAGTGTAATATAGGTGTGAGGACTAATGATGGGATCTGAACACTAAAAAAAGACTTCAAAATAATATCAGCATTAATATGTTATCTAATGCggcaactttttttatttagattttttttgaccACTTACGGAGTCACATTTAATAAGATCTAAACAGGATTGTTGCTATAAGCGTAaatgtgttttgtaaaaaaataaaatagtacacTTGACACTAAA

Function

GO:

id name namespace
GO:0016012 sarcoglycan complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko01059 Biosynthesis of enediyne antibiotics
ko01008 Polyketide biosynthesis proteins

ZFIN:

id description
ZDB-GENE-030724-1 Predicted to enable calcium ion binding activity. Predicted to be located in several cellular components, including Golgi apparatus; dendrite; and sarcolemma. Predicted to be integral component of membrane. Predicted to be part of sarcoglycan complex. Is expressed in central nervous system; retina; retinal ganglion cell layer; and retinal inner nuclear layer. Human ortholog(s) of this gene implicated in myoclonic dystonia. Orthologous to human SGCE (sarcoglycan epsilon).

Ensembl:

ensembl_id ENSDART00000131865

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030331 lncRNA downstream 53360 40943904 ~ 40985308 (-) True XLOC_014981
TCONS_00030328 lncRNA downstream 53415 40909775 ~ 40985253 (-) False XLOC_014981
TCONS_00030330 lncRNA downstream 68526 40941110 ~ 40970142 (-) False XLOC_014981
TCONS_00030329 lncRNA downstream 68588 40941110 ~ 40970080 (-) False XLOC_014981
TCONS_00029796 lncRNA downstream 116476 40921152 ~ 40922192 (-) True XLOC_014982
TCONS_00030332 lncRNA upstream 393354 41445594 ~ 41468958 (-) False XLOC_014987
TCONS_00029539 lncRNA upstream 393354 41445594 ~ 41468979 (-) True XLOC_014987
TCONS_00030333 lncRNA upstream 441537 41493777 ~ 41506484 (-) True XLOC_014989
TCONS_00030334 lncRNA upstream 460502 41512742 ~ 41513258 (-) True XLOC_014990
TCONS_00030335 lncRNA upstream 671247 41723487 ~ 41730021 (-) False XLOC_014992
TCONS_00029525 mRNA downstream 53349 40941131 ~ 40985319 (-) False XLOC_014981
TCONS_00029526 mRNA downstream 53360 40943203 ~ 40985308 (-) False XLOC_014981
TCONS_00029524 mRNA downstream 132507 40899910 ~ 40906161 (-) True XLOC_014980
TCONS_00029523 mRNA downstream 183562 40848109 ~ 40855106 (-) True XLOC_014979
TCONS_00029519 mRNA downstream 212644 40716975 ~ 40826024 (-) False XLOC_014977
TCONS_00029531 mRNA upstream 138018 41190258 ~ 41199944 (-) False XLOC_014984
TCONS_00029532 mRNA upstream 138018 41190258 ~ 41213718 (-) True XLOC_014984
TCONS_00029533 mRNA upstream 238473 41290713 ~ 41371990 (-) False XLOC_014985
TCONS_00029534 mRNA upstream 300582 41352822 ~ 41371978 (-) True XLOC_014985
TCONS_00029536 mRNA upstream 348893 41401133 ~ 41405187 (-) False XLOC_014986
TCONS_00029522 other downstream 257397 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 401977 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 852405 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029505 other downstream 1834933 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029497 other downstream 2574255 38464295 ~ 38464413 (-) True XLOC_014962
TCONS_00029535 other upstream 300582 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029546 other upstream 1120874 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 1543028 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 1626124 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 1977142 43029382 ~ 43030888 (-) True XLOC_015020

Expression Profile

//