RNA id: TU336050


Basic Information

Item Value
RNA id TU336050
length 853
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G296193
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73928861 ~ 73929759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTAAGCTGCGTGGATGAGTAGGAGCGCAGCTCCCCCATGACCGCcacgcagaagaaatatcagctgGCGCAGAGAAcgtaacagggaaaactctagaaagttgagtgaacaCTATCAACATTttcctttactgtgggaattgtgatcgaatcaatgcaatattagtaattttcaatgcaacataccgaaacaaaactaactatgcaagacttagtatgcaagagattttgttgtatgCAGAACGAATCGGAGAATGATTCTATTACATTGACACGCACGATTCAGCCAGTACTctacacaaaccggtgcgccatagccaatcagagctgcagtaggccaaaatgcaaatagaccattgccatatatggatctgtgccattcactttgatctggactgtgtttacagcatgagcggttgTGAGttgatgcgcttgttttgagatcaaagcgagagctgcatgtagccacttGTGCACATTTGtacatatcctttgctagttagtgagttattagcccagttatagatcatttgtagtcagcaatggggtAGTGACTGTAACCTGTAGGGGGGGCCATCTTGGTGGCAGCAGCAACAGCCCCCTGTGATTGGCTCTCAGTGCCTGCAGTGGAGGAAGAGGATTGACTCTGTCCTGGGGGGTCGGCCAACAGGAGCAGCCGCTGCAAGCGCCTACACACTAAACTTACTGGCAGCCGATGAGGGCCGTACTCTGACAGAGGTAGATagacgagagggacagagagagagagagagagagaggtggagagacgagagggacagaggtggagagacgagagggacagagggacgagagggacagagggatgagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336012 lncRNA downstream 55905 73872734 ~ 73872956 (-) True G296165
TU336011 lncRNA downstream 56291 73872225 ~ 73872570 (-) True G296164
TU336009 lncRNA downstream 57382 73870510 ~ 73871479 (-) False LOC110520572
TU335982 lncRNA downstream 82883 73845287 ~ 73845978 (-) True G296141
TU335970 lncRNA downstream 104197 73824192 ~ 73824664 (-) True G296129
TU335989 lncRNA upstream 18312 73948071 ~ 73949708 (-) True G296144
TU335990 lncRNA upstream 20166 73949925 ~ 73950171 (-) True G296145
TU335998 lncRNA upstream 20748 73950507 ~ 73951555 (-) False G296152
TU335999 lncRNA upstream 21267 73951026 ~ 73952102 (-) True G296152
TU335993 lncRNA upstream 25145 73954904 ~ 73956047 (-) True G296148
XM_021597963.2 mRNA downstream 39639 73883541 ~ 73889222 (-) True LOC110520575
XM_021597958.2 mRNA downstream 51285 73870489 ~ 73877576 (-) False LOC110520572
XM_021597959.2 mRNA downstream 51477 73870489 ~ 73877384 (-) False LOC110520572
XM_021597957.2 mRNA downstream 60486 73852084 ~ 73868375 (-) True LOC110520571
XM_021597956.2 mRNA downstream 60891 73852084 ~ 73867970 (-) False LOC110520571
XR_005051379.1 mRNA upstream 30657 73960416 ~ 73973401 (-) False LOC110520576
XR_005051378.1 mRNA upstream 33844 73963603 ~ 73973401 (-) False LOC110520576
XR_005051411.1 mRNA upstream 43693 73973452 ~ 73973615 (-) True LOC118964355
LOC118964353 mRNA upstream 44571 73974330 ~ 73974439 (-) True LOC118964353
XR_005051412.1 mRNA upstream 47621 73977380 ~ 73977551 (-) True LOC118964361
TU336013 other downstream 48490 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 55044 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 119265 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 153562 73773154 ~ 73775299 (-) False G296102
TU335928 other downstream 153562 73773154 ~ 73775299 (-) True G296102
TU336000 other upstream 40723 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 309428 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 2030788 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 2125362 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 2236244 76166003 ~ 76166401 (-) True G298192

Expression Profile