RNA id: TU335998


Basic Information

Item Value
RNA id TU335998
length 1049
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G296152
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73950507 ~ 73952102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacagggcagcacagctggcccttggatgtacacagagagctaacattaatcatatgcatgtcaatctctcctggctcaaagtgaaggagagagacttcATCACTAcctgtatttatgagaggtattgacatgttgaatgcgccaagctgtctgtttgaacaaCCGGAGCACAGCTAGAACAcctatgcataccccacaagacatgccaccagaggtctcttcacagtccccaagtccagaacacactatgggaggcgcacagtacaacattagagccataactacatggaactctattccacattaagtatctgatgcaagcagtaaaattaaaTTTAGAAACaatataaaaatacaccttatggaacagcggggactgtgaagcaacacaaacatagacggacacacacaataacatacgcactatacacacacatcttttgtattgtagatatgaggtagtggtggtgtatgggcctgagggcacacaatgtgttgtgaaatctgtgaatgtattatatatattttttaaatggtataaactgccttaattttgctagaccccaggaagagtagctgctgccttggcaacagatAATAGGTAATaaacacaaataaaaaaatacatgtggGCTCTCTACATCCCTGTAGAGGTACACCTAGCCTGATCCAAAAAATCTGAATGTGCTGCTTTAGTTAACTTCTCTGTGTGCTTTCAAGCACATACTGATCAGAGAACAGGCTATGGTTACCGTCCCATATTCAAACCCTGTGGTTATCACATAGCGAACACGTTACACATTCTTAATCACTTTATTAGAGCACCAGTTCTCACCCTGAGAGAATAACTGTGGATCCTGTTAGCTAATGTGGGTGTGTATTAGTATGGTTTACCTCCAGAGTTATTTatatctgtgtttgtctgtgtcacTGTCCAAGTATGGTACTACATTGTAAGAGCAAAGCAATACTCCAGAATTTGAGGTATTGTCAACTTTTAATTTCCACAGACTTTTTTCTACTGTTGTATTAAAGTTTTTTTGTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335990 lncRNA downstream 336 73949925 ~ 73950171 (-) True G296145
TU335989 lncRNA downstream 799 73948071 ~ 73949708 (-) True G296144
TU336050 lncRNA downstream 20748 73928861 ~ 73929759 (-) True G296193
TU336012 lncRNA downstream 77551 73872734 ~ 73872956 (-) True G296165
TU336011 lncRNA downstream 77937 73872225 ~ 73872570 (-) True G296164
TU335993 lncRNA upstream 3349 73954904 ~ 73956047 (-) True G296148
TU335996 lncRNA upstream 6415 73957970 ~ 73958987 (-) True G296151
TU336001 lncRNA upstream 11745 73963300 ~ 73964872 (-) False LOC110520576
TU336060 lncRNA upstream 26056 73977611 ~ 73977948 (-) True G296203
TU336066 lncRNA upstream 31547 73983102 ~ 73983378 (-) True G296206
XM_021597963.2 mRNA downstream 61285 73883541 ~ 73889222 (-) True LOC110520575
XM_021597958.2 mRNA downstream 72931 73870489 ~ 73877576 (-) False LOC110520572
XM_021597959.2 mRNA downstream 73123 73870489 ~ 73877384 (-) False LOC110520572
XM_021597957.2 mRNA downstream 82132 73852084 ~ 73868375 (-) True LOC110520571
XM_021597956.2 mRNA downstream 82537 73852084 ~ 73867970 (-) False LOC110520571
XR_005051379.1 mRNA upstream 8861 73960416 ~ 73973401 (-) False LOC110520576
XR_005051378.1 mRNA upstream 12048 73963603 ~ 73973401 (-) False LOC110520576
XR_005051411.1 mRNA upstream 21897 73973452 ~ 73973615 (-) True LOC118964355
LOC118964353 mRNA upstream 22775 73974330 ~ 73974439 (-) True LOC118964353
XR_005051412.1 mRNA upstream 25825 73977380 ~ 73977551 (-) True LOC118964361
TU336013 other downstream 70136 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 76690 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 140911 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 175208 73773154 ~ 73775299 (-) False G296102
TU336000 other upstream 18927 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 287632 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 2008992 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 2103566 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 2214448 76166003 ~ 76166401 (-) True G298192

Expression Profile