RNA id: TU336166


Basic Information

Item Value
RNA id TU336166
length 298
lncRNA type intronic
GC content 0.46
exon number 1
gene id G296299
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74170776 ~ 74171073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctggtaccaagtcagtgtgtggaggtacaggttagttgaggtaatgtgtacatgtaattaggggtgaagtgactatgcatagataataaacagcgagtagcagcagtgtacaaaacaaatggaggggggcgTGTCACTGTAAATCgtcaggtggccatttgattaattgttcagcagtcttatggttttggggtagaagctgttaaggagccttttggttctagacttggtactctggtaccgcttgccgtgcggtagcagagaaaacagtctatgacttgggtgactggagtctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336163 lncRNA downstream 1671 74168880 ~ 74169105 (-) True G296296
TU336162 lncRNA downstream 3620 74166562 ~ 74167156 (-) True G296295
TU336133 lncRNA downstream 57476 74110956 ~ 74113300 (-) True G296267
TU336073 lncRNA downstream 161100 74009319 ~ 74009676 (-) True G296213
TU336066 lncRNA downstream 187398 73983102 ~ 73983378 (-) True G296206
TU336176 lncRNA upstream 54523 74225596 ~ 74225992 (-) True G296309
TU336178 lncRNA upstream 60669 74231742 ~ 74231968 (-) True G296311
TU336184 lncRNA upstream 70207 74241280 ~ 74241668 (-) True G296317
TU336185 lncRNA upstream 70900 74241973 ~ 74242417 (-) True G296318
TU336187 lncRNA upstream 75785 74246858 ~ 74247059 (-) True G296320
XM_021597965.2 mRNA downstream 63536 74104520 ~ 74107240 (-) True LOC100136284
XM_021597964.2 mRNA downstream 141954 73985901 ~ 74028822 (-) True LOC110520577
XR_005051412.1 mRNA downstream 193225 73977380 ~ 73977551 (-) True LOC118964361
LOC118964353 mRNA downstream 196337 73974330 ~ 73974439 (-) True LOC118964353
XR_005051411.1 mRNA downstream 197161 73973452 ~ 73973615 (-) True LOC118964355
XM_021597975.2 mRNA upstream 302885 74473958 ~ 74475223 (-) True LOC110520583
NM_001124688.1 mRNA upstream 325116 74496189 ~ 74562871 (-) True LOC100136729
XM_021597977.2 mRNA upstream 415586 74586659 ~ 74600282 (-) False LOC110520585
XM_021597976.2 mRNA upstream 415586 74586659 ~ 74645214 (-) True LOC110520585
XM_021597979.2 mRNA upstream 506578 74677651 ~ 74680783 (-) False LOC110520587
TU336000 other downstream 198946 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 290405 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 296959 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 361180 73808482 ~ 73809596 (-) True G296100
TU335928 other downstream 395477 73773154 ~ 73775299 (-) True G296102
TU336182 other upstream 68114 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 1789474 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 1884048 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 1994930 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 2611770 76782843 ~ 76787731 (-) True G299024

Expression Profile