RNA id: TU336182


Basic Information

Item Value
RNA id TU336182
length 609
RNA type TUCP
GC content 0.52
exon number 1
gene id G296315
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74239187 ~ 74239795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accagtgctaagctatgcttcatctcttctccggcctgggtctggccacaatacttcgtccacatcacaagatacgttttctcttgccaaacatcgagagaagtatctcctagcatggcgtatccaaccttggacagaagcaacctctatgtccccacatggagggaagtatctcctagcatggtgtatccaaccttggacagaggcaacctctatgtccccacatggagggaagtatctcctagcatgacgtatccaaccttggacagaggcaacctctgtgtccccacatggagggaagtatctcctagcatggcgtatccaaccttggacagaggcaacctctatgtccccacatggagggaagtaccTCCTaacatggcgtatccaaccttggacagaggcaacctctatgtccccacatggagggaagtatctcctagcatggcgtatccaaccttggacagaggcaacctctatgtccccacatggagggaagtatctcctagcgtgGCGTATCcgaccttggacagaggcaacctctatgtccccacatggagggaagtatctcctagcatggcgtatccaaccttggacagaggcaacctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336178 lncRNA downstream 7219 74231742 ~ 74231968 (-) True G296311
TU336176 lncRNA downstream 13195 74225596 ~ 74225992 (-) True G296309
TU336166 lncRNA downstream 68114 74170776 ~ 74171073 (-) True G296299
TU336163 lncRNA downstream 70082 74168880 ~ 74169105 (-) True G296296
TU336162 lncRNA downstream 72031 74166562 ~ 74167156 (-) True G296295
TU336184 lncRNA upstream 1485 74241280 ~ 74241668 (-) True G296317
TU336185 lncRNA upstream 2178 74241973 ~ 74242417 (-) True G296318
TU336187 lncRNA upstream 7063 74246858 ~ 74247059 (-) True G296320
TU336188 lncRNA upstream 7790 74247585 ~ 74247812 (-) True G296321
TU336227 lncRNA upstream 76856 74316651 ~ 74316884 (-) True G296359
XM_021597965.2 mRNA downstream 131947 74104520 ~ 74107240 (-) True LOC100136284
XM_021597964.2 mRNA downstream 210365 73985901 ~ 74028822 (-) True LOC110520577
XR_005051412.1 mRNA downstream 261636 73977380 ~ 73977551 (-) True LOC118964361
LOC118964353 mRNA downstream 264748 73974330 ~ 73974439 (-) True LOC118964353
XR_005051411.1 mRNA downstream 265572 73973452 ~ 73973615 (-) True LOC118964355
XM_021597975.2 mRNA upstream 234163 74473958 ~ 74475223 (-) True LOC110520583
NM_001124688.1 mRNA upstream 256394 74496189 ~ 74562871 (-) True LOC100136729
XM_021597977.2 mRNA upstream 346864 74586659 ~ 74600282 (-) False LOC110520585
XM_021597976.2 mRNA upstream 346864 74586659 ~ 74645214 (-) True LOC110520585
XM_021597979.2 mRNA upstream 437856 74677651 ~ 74680783 (-) False LOC110520587
TU336000 other downstream 267357 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 358816 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 365370 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 429591 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 463888 73773154 ~ 73775299 (-) False G296102
TU338161 other upstream 1720752 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 1815326 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 1926208 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 2543048 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 3596687 77836482 ~ 77839215 (-) True pknox1.1

Expression Profile