RNA id: TCONS_00029537


Basic Information

Item Value
RNA id TCONS_00029537
length 358
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_014986
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 41401133 ~ 41405315 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caacttatccagcatatgttttacgcagcggatccccttgcagctgcaagccatcataagctaaattggcggtagtacatgtgtgtgaatgggagtgtataagtgtttcccagtgatgggttgcagctgtaagcgcatccgctgcgtaaagcatgtgctgaatcagttggcgAAACACAACATGTCAGAAAAGAAGCAAACAGTGGATTTGGGGCTTTTGGAGGAGGATGATGAATTTGAGGAATTCCCAGCAGAGGACTGGACGGGCCTGGATGAAGATGAGGATGCTCATGTTTGGGAAGATAACTGGGATGACGACAACGTAGAGGATGACTTTTCTAATCAGCTGAGAGCGGAG

Function

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0043248 proteasome assembly biological_process
GO:0008541 proteasome regulatory particle, lid subcomplex cellular_component
GO:0000502 proteasome complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-988 Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within mRNA export from nucleus and proteasome assembly. Predicted to be part of proteasome complex. Orthologous to human SEM1 (SEM1 26S proteasome subunit).

Ensembl:

ensembl_id ENSDART00000172350

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030331 lncRNA downstream 416764 40943904 ~ 40985308 (-) True XLOC_014981
TCONS_00030328 lncRNA downstream 416819 40909775 ~ 40985253 (-) False XLOC_014981
TCONS_00030332 lncRNA upstream 40279 41445594 ~ 41468958 (-) False XLOC_014987
TCONS_00029539 lncRNA upstream 40279 41445594 ~ 41468979 (-) True XLOC_014987
TCONS_00030333 lncRNA upstream 88462 41493777 ~ 41506484 (-) True XLOC_014989
TCONS_00030334 lncRNA upstream 107427 41512742 ~ 41513258 (-) True XLOC_014990
TCONS_00030335 lncRNA upstream 318172 41723487 ~ 41730021 (-) False XLOC_014992
TCONS_00029533 mRNA downstream 30082 41290713 ~ 41371990 (-) False XLOC_014985
TCONS_00029534 mRNA downstream 30094 41352822 ~ 41371978 (-) True XLOC_014985
TCONS_00029532 mRNA downstream 188354 41190258 ~ 41213718 (-) True XLOC_014984
TCONS_00029531 mRNA downstream 202128 41190258 ~ 41199944 (-) False XLOC_014984
TCONS_00029530 mRNA downstream 332371 41039028 ~ 41069701 (-) True XLOC_014983
TCONS_00029540 mRNA upstream 64901 41470216 ~ 41472228 (-) True XLOC_014988
TCONS_00029541 mRNA upstream 110444 41515759 ~ 41518951 (-) False XLOC_014991
TCONS_00029542 mRNA upstream 110887 41516202 ~ 41518922 (-) True XLOC_014991
TCONS_00029543 mRNA upstream 435832 41841147 ~ 41991104 (-) False XLOC_014993
TCONS_00029544 mRNA upstream 435868 41841183 ~ 42045372 (-) False XLOC_014993
TCONS_00029535 other downstream 30094 41352822 ~ 41371978 (-) False XLOC_014985
TCONS_00029522 other downstream 620801 40781168 ~ 40781271 (-) True XLOC_014978
TCONS_00029518 other downstream 765381 40636572 ~ 40636691 (-) True XLOC_014976
TCONS_00029512 other downstream 1215809 40182734 ~ 40186263 (-) True XLOC_014972
TCONS_00029505 other downstream 2198337 39203618 ~ 39203735 (-) True XLOC_014966
TCONS_00029546 other upstream 767799 42173114 ~ 42173228 (-) True XLOC_014994
TCONS_00029578 other upstream 1189953 42595268 ~ 42595384 (-) True XLOC_015011
TCONS_00029580 other upstream 1273049 42678364 ~ 42678480 (-) True XLOC_015013
TCONS_00029587 other upstream 1624067 43029382 ~ 43030888 (-) True XLOC_015020
TCONS_00029605 other upstream 2644332 44049647 ~ 44062549 (-) False XLOC_015032