RNA id: TU337557


Basic Information

Item Value
RNA id TU337557
length 485
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G297500
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 75163208 ~ 75163692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTATAAAATTACAAATATACTTCTATTAtaaaaagccatttcttaaatacTCTTCCAGCTCAAGTTTTGTATAAAGGACGCATAGTATGTGAGAtggtgtttgtctgtctgacaGTGTCCCAATACTTTTACAAAGCTTAATTTCCTTAATCTCCTTCCTAATATCCTCCCCTAGTCTCCTCCATGACTTGTAAAAGTTTATAAACTAGGGCTGTGTCAGAAATAATACCCAATGTTATATAGTGCAATAGGACATGAGGTGCTATTTCACATTTGCCCATTCTAACTGTGTAAACAAACCTATTTAACCTATCCAGTACAATCAGATCAGCTCatgaaggaaaggagatgaggaagaggaaaggagatgaggagatgacgCTGTCTTATACTATTGGGACGCAGCCTTGAGATGAAGTTGTTCAGTACTTCTGACAGCCACTTTGACTGTCCCTGTTCACAGCACTcctggagtttgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337552 lncRNA downstream 3425 75157320 ~ 75159783 (-) False G297496
TU337553 lncRNA downstream 3425 75157320 ~ 75159783 (-) True G297496
TU336965 lncRNA downstream 74170 75088786 ~ 75089038 (-) True G296976
TU336962 lncRNA downstream 78933 75084041 ~ 75084275 (-) True G296973
TU336888 lncRNA downstream 117809 74992391 ~ 75045399 (-) True G296913
TU337559 lncRNA upstream 1415 75165107 ~ 75165453 (-) True G297502
TU337561 lncRNA upstream 4891 75168583 ~ 75168822 (-) True G297504
TU337562 lncRNA upstream 5137 75168829 ~ 75169084 (-) True G297505
TU337600 lncRNA upstream 74213 75237905 ~ 75238780 (-) True G297535
TU337605 lncRNA upstream 85992 75249684 ~ 75250329 (-) True G297540
XR_005051381.1 mRNA downstream 233403 74915219 ~ 74929805 (-) False LOC118964329
XM_036975210.1 mRNA downstream 270888 74891721 ~ 74892320 (-) True LOC118964328
LOC118964358 mRNA downstream 285506 74877548 ~ 74877702 (-) True LOC118964358
XM_021597979.2 mRNA downstream 482425 74677651 ~ 74680783 (-) False LOC110520587
XM_036975220.1 mRNA upstream 371322 75535014 ~ 75579461 (-) False LOC110520594
XM_036975221.1 mRNA upstream 371322 75535014 ~ 75579461 (-) False LOC110520594
XM_036975219.1 mRNA upstream 371322 75535014 ~ 75579525 (-) True LOC110520594
XM_021597988.2 mRNA upstream 418340 75582032 ~ 75628907 (-) False LOC110520593
XM_036975222.1 mRNA upstream 418340 75582032 ~ 75628909 (-) True LOC110520593
TU336182 other downstream 923413 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 1191378 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 1282837 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 1289391 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 1353612 73808482 ~ 73809596 (-) True G296100
TU338161 other upstream 796855 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 891429 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 1002311 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 1619151 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 2672790 77836482 ~ 77839215 (-) True pknox1.1

Expression Profile