RNA id: TU337600


Basic Information

Item Value
RNA id TU337600
length 472
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G297535
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 75237905 ~ 75238780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCAACACTAACAGTCACTATGTTATGATATCATAAAACGTAATGTCTTCAACCCTAACAGTCACTATGTTATGATATCATAAAACGTAATGTCTTCACCCCTAACAGTCACTATGTTATGATATCATAAAACGTAATGTCTTCAACCCTAACAGTCACTATGTTATGATATCATAAAACGTAATGTCTTCAACACTAACAGTCACTATGTTATGATATCATAAAACGTAATGTCTTTAACAGTCACTATGTTATGATATCATAAAACGTAATGGTCTTCAACACTAACAGTCACTATGTTATGATATCATAAAACGTAATGTCTTCAACACTAACAGTCACTATGTTATGATATCATAAAACGTAATGTCTTCAACAGTCACTATGTTATGATATCATAAAACGTAATGTCTTCAACAGTCACTATGTTATGATATCATAAAACGTAATGTCTTCAACACTAACAGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU337562 lncRNA downstream 68821 75168829 ~ 75169084 (-) True G297505
TU337561 lncRNA downstream 69083 75168583 ~ 75168822 (-) True G297504
TU337559 lncRNA downstream 72452 75165107 ~ 75165453 (-) True G297502
TU337557 lncRNA downstream 74213 75163208 ~ 75163692 (-) True G297500
TU337552 lncRNA downstream 78122 75157320 ~ 75159783 (-) False G297496
TU337605 lncRNA upstream 10904 75249684 ~ 75250329 (-) True G297540
TU337627 lncRNA upstream 55303 75294083 ~ 75294376 (-) True G297561
TU337655 lncRNA upstream 110588 75349368 ~ 75350405 (-) True G297587
TU337705 lncRNA upstream 189492 75428272 ~ 75431867 (-) False G297635
TU337707 lncRNA upstream 191964 75430744 ~ 75439200 (-) True G297635
XR_005051381.1 mRNA downstream 308100 74915219 ~ 74929805 (-) False LOC118964329
XM_036975210.1 mRNA downstream 345585 74891721 ~ 74892320 (-) True LOC118964328
LOC118964358 mRNA downstream 360203 74877548 ~ 74877702 (-) True LOC118964358
XM_021597979.2 mRNA downstream 557122 74677651 ~ 74680783 (-) False LOC110520587
XM_036975220.1 mRNA upstream 296234 75535014 ~ 75579461 (-) False LOC110520594
XM_036975221.1 mRNA upstream 296234 75535014 ~ 75579461 (-) False LOC110520594
XM_036975219.1 mRNA upstream 296234 75535014 ~ 75579525 (-) True LOC110520594
XM_021597988.2 mRNA upstream 343252 75582032 ~ 75628907 (-) False LOC110520593
XM_036975222.1 mRNA upstream 343252 75582032 ~ 75628909 (-) True LOC110520593
TU336182 other downstream 998110 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 1266075 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 1357534 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 1364088 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 1428309 73808482 ~ 73809596 (-) True G296100
TU338161 other upstream 721767 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 816341 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 927223 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 1544063 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 2597702 77836482 ~ 77839215 (-) True pknox1.1

Expression Profile