RNA id: TU338161


Basic Information

Item Value
RNA id TU338161
length 1085
RNA type TUCP
GC content 0.49
exon number 2
gene id G298065
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 75960547 ~ 75963074 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAACGATTTGTCAGAGTAAACTCTGCCAACTCAGTGGCCCCGCCCATGTGAACAGACAGTGGTTGTAAACTCTGCCAACTCAGTGGCCACGCCCATGTGAACAGACAATGGTTGTAAACTCTGCCAACTCAGTGGCCACGCCAATGTGAACagtggttgtaaactatgaaacacggcCCTCTCTCCCAATCCTATATAAGCCCCTTAACGAAAAGGTAACTTTCTGTTCCGAGGACGTTAGGGCGACGGTCCTACGTTAAAAGGGTCAGATAATAACTGGTTCCAAGGACGTGTGGACTTGAGGTCCCCACGTTGAAAGGACAAAGACCACCTACAGAATTAAGACAATCTTAGAGAACGTAACGAAATTAGCATAGAATTTCAATGTGAAGGTGACAACCTACATGCCAGAAGGATGAATTTCCaatataccagccagaatatagcatgagcataTAGCAtagcaacttggtatgaactttgaacacttattcactaaagaagttaTACCTCCTAGCCGTCGCGTTAGCGCAGCAACTGTAGACGTGGGCTACGAGAGGACGGGCAGAGTATGTGTTCTACCACAAGACGACAGTACTACCAAGTGTCCATTCTACCatcagacattcttcaaaggacaactCGGCCTCCCATCTACGACCAACCgatcgaagcgcagctcagagcaatctcaacgctgtgcgttacaaggaggacatcctcctccctcatgtggtacccttgctgcaggctcatcctgacatgaccctccagcatgacaatgccaccagccatactgtttgttcagtgcgtgatttcctgcaagacgggaatgtcagtgttctgccatggccagcgaagagcctggatctcaaacccattgagtacgtctgggacctgtttgattggagggtgagggctagcgccattccccccagaaatgtccaggaaattgcaggtgccttggtggaagagtggggtaacatatcacatcaagaactggcaaatctggtgcagtccatggggaggagatgcactgcagtacttaacgcAGCTGgttgccacaccagatactgactgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338155 lncRNA downstream 5706 75954528 ~ 75954841 (-) True G298059
TU338150 lncRNA downstream 14769 75945518 ~ 75945778 (-) True G298054
TU338149 lncRNA downstream 15894 75944425 ~ 75944653 (-) True G298053
TU338147 lncRNA downstream 19251 75941051 ~ 75941296 (-) True G298051
TU337995 lncRNA downstream 86815 75872901 ~ 75873732 (-) False G297907
TU338164 lncRNA upstream 1866 75964940 ~ 75965708 (-) True G298067
TU338195 lncRNA upstream 36765 75999839 ~ 76001025 (-) True G298098
TU338260 lncRNA upstream 130371 76093445 ~ 76096325 (-) True G298154
TU338261 lncRNA upstream 136005 76099079 ~ 76099438 (-) True G298155
TU338314 lncRNA upstream 214467 76177541 ~ 76177748 (-) True G298197
XM_036975225.1 mRNA downstream 40855 75854733 ~ 75919692 (-) True LOC110520599
trnaa-ugc-5 mRNA downstream 70110 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_036975222.1 mRNA downstream 331638 75582032 ~ 75628909 (-) True LOC110520593
XM_021597988.2 mRNA downstream 331640 75582032 ~ 75628907 (-) False LOC110520593
XM_036975219.1 mRNA downstream 381022 75535014 ~ 75579525 (-) True LOC110520594
XM_036975230.1 mRNA upstream 139763 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA upstream 139763 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA upstream 139763 76102837 ~ 76118153 (-) True LOC110520602
XR_005039942.1 mRNA upstream 197043 76160117 ~ 76171119 (-) True LOC118944635
XM_036975231.1 mRNA upstream 557130 76520204 ~ 76857463 (-) True LOC110520604
TU336182 other downstream 1720752 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 1988717 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 2080176 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 2086730 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 2150951 73808482 ~ 73809596 (-) True G296100
TU338234 other upstream 92047 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 202929 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 819769 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1873408 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1881593 77844667 ~ 77850766 (-) False LOC110520626

Expression Profile