RNA id: TU338234


Basic Information

Item Value
RNA id TU338234
length 950
RNA type TUCP
GC content 0.48
exon number 3
gene id G298131
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 76055121 ~ 76057006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatatacagggggtaccagtacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggttatatacagggggtactgatacagagtcaatgtggaggctatatacagggtgtgccggtacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggggtactggtacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggtgttacggcacagagtcaatgtggaggctatatacagggtgttacggcacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacagggggtacgggtacagagtcaatgtggaggctatatacagggggtactggtacagagtcaatgtggaggctatatacagggggtaccagtacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggggtacaggtacagagtcaatgtggaggctatatacagggtgttacggtacagagtcaatgtggaggctatatacaaggtgttacggtacagagtcaatgtggaggctatatacaggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU338195 lncRNA downstream 54096 75999839 ~ 76001025 (-) True G298098
TU338164 lncRNA downstream 89413 75964940 ~ 75965708 (-) True G298067
TU338155 lncRNA downstream 100280 75954528 ~ 75954841 (-) True G298059
TU338150 lncRNA downstream 109343 75945518 ~ 75945778 (-) True G298054
TU338149 lncRNA downstream 110468 75944425 ~ 75944653 (-) True G298053
TU338260 lncRNA upstream 36439 76093445 ~ 76096325 (-) True G298154
TU338261 lncRNA upstream 42073 76099079 ~ 76099438 (-) True G298155
TU338314 lncRNA upstream 120535 76177541 ~ 76177748 (-) True G298197
TU338317 lncRNA upstream 123112 76180118 ~ 76180438 (-) True G298200
TU338426 lncRNA upstream 204849 76261855 ~ 76262081 (-) True G298307
XM_036975225.1 mRNA downstream 135429 75854733 ~ 75919692 (-) True LOC110520599
trnaa-ugc-5 mRNA downstream 164684 75890365 ~ 75890437 (-) True trnaa-ugc-5
XM_036975222.1 mRNA downstream 426212 75582032 ~ 75628909 (-) True LOC110520593
XM_021597988.2 mRNA downstream 426214 75582032 ~ 75628907 (-) False LOC110520593
XM_036975219.1 mRNA downstream 475596 75535014 ~ 75579525 (-) True LOC110520594
XM_036975230.1 mRNA upstream 45831 76102837 ~ 76118153 (-) False LOC110520602
XR_005051382.1 mRNA upstream 45831 76102837 ~ 76118153 (-) False LOC110520602
XR_005051383.1 mRNA upstream 45831 76102837 ~ 76118153 (-) True LOC110520602
XR_005039942.1 mRNA upstream 103111 76160117 ~ 76171119 (-) True LOC118944635
XM_036975231.1 mRNA upstream 463198 76520204 ~ 76857463 (-) True LOC110520604
TU338161 other downstream 92047 75960547 ~ 75963074 (-) True G298065
TU336182 other downstream 1815326 74239187 ~ 74239795 (-) True G296315
TU336000 other downstream 2083291 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 2174750 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 2181304 73872973 ~ 73873817 (-) True LOC110520572
TU338309 other upstream 108997 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 725837 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 1779476 77836482 ~ 77839215 (-) True pknox1.1
TU340453 other upstream 1787661 77844667 ~ 77850766 (-) False LOC110520626
TU340455 other upstream 1787661 77844667 ~ 77850766 (-) True LOC110520626

Expression Profile